Literature DB >> 33604228

Colonic Polyp Detection in Endoscopic Videos With Single Shot Detection Based Deep Convolutional Neural Network.

Ming Liu1, Jue Jiang2, Zenan Wang3.   

Abstract

A major rise in the prevalence and influence of colorectal cancer (CRC) leads to substantially increasing healthcare costs and even death. It is widely accepted that early detection and removal of colonic polyps can prevent CRC. Detection of colonic polyps in colonoscopy videos is problematic because of complex environment of colon and various shapes of polyps. Currently, researchers indicate feasibility of Convolutional Neural Network (CNN)-based detection of polyps but better feature extractors are needed to improve detection performance. In this paper, we investigated the potential of the single shot detector (SSD) framework for detecting polyps in colonoscopy videos. SSD is a one-stage method, which uses a feed-forward CNN to produce a collection of fixed-size bounding boxes for each object from different feature maps. Three different feature extractors, including ResNet50, VGG16, and InceptionV3 were assessed. Multi-scale feature maps integrated into SSD were designed for ResNet50 and InceptionV3, respectively. We validated this method on the 2015 MICCAI polyp detection challenge datasets, compared it with teams attended the challenge, YOLOV3 and two-stage method, Faster-RCNN. Our results demonstrated that the proposed method surpassed all the teams in MICCAI challenge and YOLOV3 and was comparable with two-stage method. Especially in detection speed aspect, our proposed method outperformed all the methods, met real-time application requirement. Meanwhile, we also indicated that among all the feature extractors, InceptionV3 obtained the best result of precision and recall. In conclusion, SSD- based method achieved excellent detection performance in polyp detection and can potentially improve diagnostic accuracy and efficiency.

Entities:  

Keywords:  Colonic polyp detection; convolutional neural network; single shot detector (SSD)

Year:  2019        PMID: 33604228      PMCID: PMC7889061          DOI: 10.1109/access.2019.2921027

Source DB:  PubMed          Journal:  IEEE Access        ISSN: 2169-3536            Impact factor:   3.367


  17 in total

1.  Part-based multiderivative edge cross-sectional profiles for polyp detection in colonoscopy.

Authors:  Yi Wang; Wallapak Tavanapong; Johnny Wong; JungHwan Oh; Piet C de Groen
Journal:  IEEE J Biomed Health Inform       Date:  2013-10-09       Impact factor: 5.772

2.  WM-DOVA maps for accurate polyp highlighting in colonoscopy: Validation vs. saliency maps from physicians.

Authors:  Jorge Bernal; F Javier Sánchez; Gloria Fernández-Esparrach; Debora Gil; Cristina Rodríguez; Fernando Vilariño
Journal:  Comput Med Imaging Graph       Date:  2015-03-20       Impact factor: 4.790

3.  Integrating Online and Offline Three-Dimensional Deep Learning for Automated Polyp Detection in Colonoscopy Videos.

Authors: 
Journal:  IEEE J Biomed Health Inform       Date:  2016-12-07       Impact factor: 5.772

4.  Comparative Validation of Polyp Detection Methods in Video Colonoscopy: Results From the MICCAI 2015 Endoscopic Vision Challenge.

Authors:  Jorge Bernal; Nima Tajkbaksh; Francisco Javier Sanchez; Bogdan J Matuszewski; Quentin Angermann; Olivier Romain; Bjorn Rustad; Ilangko Balasingham; Konstantin Pogorelov; Quentin Debard; Lena Maier-Hein; Stefanie Speidel; Danail Stoyanov; Patrick Brandao; Henry Cordova; Cristina Sanchez-Montes; Suryakanth R Gurudu; Gloria Fernandez-Esparrach; Xavier Dray; Aymeric Histace
Journal:  IEEE Trans Med Imaging       Date:  2017-02-02       Impact factor: 10.048

5.  Convolutional Neural Networks for Medical Image Analysis: Full Training or Fine Tuning?

Authors:  Nima Tajbakhsh; Jae Y Shin; Suryakanth R Gurudu; R Todd Hurst; Christopher B Kendall; Michael B Gotway
Journal:  IEEE Trans Med Imaging       Date:  2016-03-07       Impact factor: 10.048

6.  Fully Convolutional Networks for Semantic Segmentation.

Authors:  Evan Shelhamer; Jonathan Long; Trevor Darrell
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2016-05-24       Impact factor: 6.226

7.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.

Authors:  Varun Gulshan; Lily Peng; Marc Coram; Martin C Stumpe; Derek Wu; Arunachalam Narayanaswamy; Subhashini Venugopalan; Kasumi Widner; Tom Madams; Jorge Cuadros; Ramasamy Kim; Rajiv Raman; Philip C Nelson; Jessica L Mega; Dale R Webster
Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

8.  Diagnostic Assessment of Deep Learning Algorithms for Detection of Lymph Node Metastases in Women With Breast Cancer.

Authors:  Babak Ehteshami Bejnordi; Mitko Veta; Paul Johannes van Diest; Bram van Ginneken; Nico Karssemeijer; Geert Litjens; Jeroen A W M van der Laak; Meyke Hermsen; Quirine F Manson; Maschenka Balkenhol; Oscar Geessink; Nikolaos Stathonikos; Marcory Crf van Dijk; Peter Bult; Francisco Beca; Andrew H Beck; Dayong Wang; Aditya Khosla; Rishab Gargeya; Humayun Irshad; Aoxiao Zhong; Qi Dou; Quanzheng Li; Hao Chen; Huang-Jing Lin; Pheng-Ann Heng; Christian Haß; Elia Bruni; Quincy Wong; Ugur Halici; Mustafa Ümit Öner; Rengul Cetin-Atalay; Matt Berseth; Vitali Khvatkov; Alexei Vylegzhanin; Oren Kraus; Muhammad Shaban; Nasir Rajpoot; Ruqayya Awan; Korsuk Sirinukunwattana; Talha Qaiser; Yee-Wah Tsang; David Tellez; Jonas Annuscheit; Peter Hufnagl; Mira Valkonen; Kimmo Kartasalo; Leena Latonen; Pekka Ruusuvuori; Kaisa Liimatainen; Shadi Albarqouni; Bharti Mungal; Ami George; Stefanie Demirci; Nassir Navab; Seiryo Watanabe; Shigeto Seno; Yoichi Takenaka; Hideo Matsuda; Hady Ahmady Phoulady; Vassili Kovalev; Alexander Kalinovsky; Vitali Liauchuk; Gloria Bueno; M Milagro Fernandez-Carrobles; Ismael Serrano; Oscar Deniz; Daniel Racoceanu; Rui Venâncio
Journal:  JAMA       Date:  2017-12-12       Impact factor: 56.272

Review 9.  Polyp miss rate determined by tandem colonoscopy: a systematic review.

Authors:  Jeroen C van Rijn; Johannes B Reitsma; Jaap Stoker; Patrick M Bossuyt; Sander J van Deventer; Evelien Dekker
Journal:  Am J Gastroenterol       Date:  2006-02       Impact factor: 10.864

10.  Real-time gastric polyp detection using convolutional neural networks.

Authors:  Xu Zhang; Fei Chen; Tao Yu; Jiye An; Zhengxing Huang; Jiquan Liu; Weiling Hu; Liangjing Wang; Huilong Duan; Jianmin Si
Journal:  PLoS One       Date:  2019-03-25       Impact factor: 3.240

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  3 in total

1.  Endoscopy Artefact Detection by Deep Transfer Learning of Baseline Models.

Authors:  Tang-Kai Yin; Kai-Lun Huang; Si-Rong Chiu; Yu-Qi Yang; Bao-Rong Chang
Journal:  J Digit Imaging       Date:  2022-04-27       Impact factor: 4.903

2.  Malaria parasite detection in thick blood smear microscopic images using modified YOLOV3 and YOLOV4 models.

Authors:  Fetulhak Abdurahman; Kinde Anlay Fante; Mohammed Aliy
Journal:  BMC Bioinformatics       Date:  2021-03-08       Impact factor: 3.169

3.  Multi-Scale Hybrid Network for Polyp Detection in Wireless Capsule Endoscopy and Colonoscopy Images.

Authors:  Meryem Souaidi; Mohamed El Ansari
Journal:  Diagnostics (Basel)       Date:  2022-08-22
  3 in total

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