Literature DB >> 33603792

Chromatin Regulation in Development: Current Understanding and Approaches.

Zi Hao Zheng1,2, Tsz Wing Sam1,2, YingYing Zeng1,3, Justin Jang Hann Chu4,5,6,7, Yuin-Han Loh1,2,7,8.   

Abstract

The regulation of mammalian stem cell fate during differentiation is complex and can be delineated across many levels. At the chromatin level, the replacement of histone variants by chromatin-modifying proteins, enrichment of specific active and repressive histone modifications, long-range gene interactions, and topological changes all play crucial roles in the determination of cell fate. These processes control regulatory elements of critical transcriptional factors, thereby establishing the networks unique to different cell fates and initiate waves of distinctive transcription events. Due to the technical challenges posed by previous methods, it was difficult to decipher the mechanism of cell fate determination at early embryogenesis through chromatin regulation. Recently, single-cell approaches have revolutionised the field of developmental biology, allowing unprecedented insights into chromatin structure and interactions in early lineage segregation events during differentiation. Here, we review the recent technological advancements and how they have furthered our understanding of chromatin regulation during early differentiation events.
Copyright © 2021 Zi Hao Zheng et al.

Entities:  

Year:  2021        PMID: 33603792      PMCID: PMC7872760          DOI: 10.1155/2021/8817581

Source DB:  PubMed          Journal:  Stem Cells Int            Impact factor:   5.443


  106 in total

1.  Initiation of trophectoderm lineage specification in mouse embryos is independent of Cdx2.

Authors:  Guangming Wu; Luca Gentile; Takuya Fuchikami; Julien Sutter; Katherina Psathaki; Telma C Esteves; Marcos J Araúzo-Bravo; Claudia Ortmeier; Gaby Verberk; Kuniya Abe; Hans R Schöler
Journal:  Development       Date:  2010-12       Impact factor: 6.868

2.  A brief history of the status of transposable elements: from junk DNA to major players in evolution.

Authors:  Christian Biémont
Journal:  Genetics       Date:  2010-12       Impact factor: 4.562

3.  SMYD5 Controls Heterochromatin and Chromosome Integrity during Embryonic Stem Cell Differentiation.

Authors:  Benjamin L Kidder; Runsheng He; Darawalee Wangsa; Hesed M Padilla-Nash; M Margarida Bernardo; Shijie Sheng; Thomas Ried; Keji Zhao
Journal:  Cancer Res       Date:  2017-09-26       Impact factor: 12.701

4.  In vitro capture and characterization of embryonic rosette-stage pluripotency between naive and primed states.

Authors:  Alex Neagu; Emiel van Genderen; Irene Escudero; Lucas Verwegen; Dorota Kurek; Johannes Lehmann; Jente Stel; René A M Dirks; Guido van Mierlo; Alex Maas; Cindy Eleveld; Yang Ge; Alexander T den Dekker; Rutger W W Brouwer; Wilfred F J van IJcken; Miha Modic; Micha Drukker; Joop H Jansen; Nicolas C Rivron; Esther B Baart; Hendrik Marks; Derk Ten Berge
Journal:  Nat Cell Biol       Date:  2020-05-04       Impact factor: 28.824

5.  The chromatin remodeler Chd4 maintains embryonic stem cell identity by controlling pluripotency- and differentiation-associated genes.

Authors:  Haixin Zhao; Zhijun Han; Xinyuan Liu; Junjie Gu; Fan Tang; Gang Wei; Ying Jin
Journal:  J Biol Chem       Date:  2017-03-15       Impact factor: 5.157

6.  Embryonic stem cell potency fluctuates with endogenous retrovirus activity.

Authors:  Todd S Macfarlan; Wesley D Gifford; Shawn Driscoll; Karen Lettieri; Helen M Rowe; Dario Bonanomi; Amy Firth; Oded Singer; Didier Trono; Samuel L Pfaff
Journal:  Nature       Date:  2012-07-05       Impact factor: 49.962

7.  Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules.

Authors:  Theresa K Kelly; Yaping Liu; Fides D Lay; Gangning Liang; Benjamin P Berman; Peter A Jones
Journal:  Genome Res       Date:  2012-09-07       Impact factor: 9.043

8.  An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites.

Authors:  Peter J Skene; Steven Henikoff
Journal:  Elife       Date:  2017-01-16       Impact factor: 8.140

9.  Parallel bimodal single-cell sequencing of transcriptome and chromatin accessibility.

Authors:  Qiao Rui Xing; Chadi A El Farran; Ying Ying Zeng; Yao Yi; Tushar Warrier; Pradeep Gautam; James J Collins; Jian Xu; Peter Dröge; Cheng-Gee Koh; Hu Li; Li-Feng Zhang; Yuin-Han Loh
Journal:  Genome Res       Date:  2020-07-22       Impact factor: 9.043

10.  A transcriptional roadmap for 2C-like-to-pluripotent state transition.

Authors:  Xudong Fu; Mohamed Nadhir Djekidel; Yi Zhang
Journal:  Sci Adv       Date:  2020-05-29       Impact factor: 14.136

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  2 in total

Review 1.  Multidisciplinary approaches for elucidating genetics and molecular pathogenesis of urinary tract malformations.

Authors:  Kamal Khan; Dina F Ahram; Yangfan P Liu; Rik Westland; Rosemary V Sampogna; Nicholas Katsanis; Erica E Davis; Simone Sanna-Cherchi
Journal:  Kidney Int       Date:  2021-11-12       Impact factor: 10.612

Review 2.  Role of epigenetic transgenerational inheritance in generational toxicology.

Authors:  Eric E Nilsson; Millissia Ben Maamar; Michael K Skinner
Journal:  Environ Epigenet       Date:  2022-02-16
  2 in total

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