Literature DB >> 21156958

A brief history of the status of transposable elements: from junk DNA to major players in evolution.

Christian Biémont1.   

Abstract

The idea that some genetic factors are able to move around chromosomes emerged more than 60 years ago when Barbara McClintock first suggested that such elements existed and had a major role in controlling gene expression and that they also have had a major influence in reshaping genomes in evolution. It was many years, however, before the accumulation of data and theories showed that this latter revolutionary idea was correct although, understandably, it fell far short of our present view of the significant influence of what are now known as "transposable elements" in evolution. In this article, I summarize the main events that influenced my thinking about transposable elements as a young scientist and the influence and role of these specific genomic elements in evolution over subsequent years. Today, we recognize that the findings about genomic changes affected by transposable elements have considerably altered our view of the ways in which genomes evolve and work.

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Year:  2010        PMID: 21156958      PMCID: PMC2998295          DOI: 10.1534/genetics.110.124180

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  91 in total

1.  Molecular domestication--more than a sporadic episode in evolution.

Authors:  W J Miller; J F McDonald; D Nouaud; D Anxolabéhère
Journal:  Genetica       Date:  1999       Impact factor: 1.082

2.  The distribution of transposable elements within and between chromosomes in a population of Drosophila melanogaster. I. Element frequencies and distribution.

Authors:  B Charlesworth; A Lapid; D Canada
Journal:  Genet Res       Date:  1992-10       Impact factor: 1.588

3.  Molecular study of the retrovirus-like transposable element 412, a 20-OH ecdysone responsive repetitive sequence in Drosophila cultured cells.

Authors:  D Micard; J L Couderc; M L Sobrier; G Giraud; B Dastugue
Journal:  Nucleic Acids Res       Date:  1988-01-25       Impact factor: 16.971

4.  The significance of responses of the genome to challenge.

Authors:  B McClintock
Journal:  Science       Date:  1984-11-16       Impact factor: 47.728

5.  Can ecology help genomics: the genome as ecosystem?

Authors:  Rodney Mauricio
Journal:  Genetica       Date:  2005-02       Impact factor: 1.082

6.  Extrachromosomal DNA forms of copia-like transposable elements, F elements and middle repetitive DNA sequences in Drosophila melanogaster. Variation in cultured cells and embryos.

Authors:  K G Mossie; M W Young; H E Varmus
Journal:  J Mol Biol       Date:  1985-03-05       Impact factor: 5.469

7.  Do genetic recombination and gene density shape the pattern of DNA elimination in rice long terminal repeat retrotransposons?

Authors:  Zhixi Tian; Carene Rizzon; Jianchang Du; Liucun Zhu; Jeffrey L Bennetzen; Scott A Jackson; Brandon S Gaut; Jianxin Ma
Journal:  Genome Res       Date:  2009-09-29       Impact factor: 9.043

Review 8.  Retroviruses.

Authors:  H Varmus
Journal:  Science       Date:  1988-06-10       Impact factor: 47.728

9.  Clustering and methylation of repeated DNA: persistence in avian development and evolution.

Authors:  D A Sobieski; F C Eden
Journal:  Nucleic Acids Res       Date:  1981-11-25       Impact factor: 16.971

10.  Computational and biological inference of gene regulatory networks of the LINE-1 retrotransposon.

Authors:  Kenneth S Ramos; Qiang He; Ted Kalbfleisch; Diego E Montoya-Durango; Ivo Teneng; Vilius Stribinskis; Marcel Brun
Journal:  Genomics       Date:  2007-05-22       Impact factor: 5.736

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  85 in total

Review 1.  Transposase-mediated gene modulation in the placenta.

Authors:  Marlee Elston; Johann Urschitz
Journal:  Placenta       Date:  2017-07-29       Impact factor: 3.481

2.  Tropical Africa as a cradle for horizontal transfers of transposable elements between species of the genera Drosophila and Zaprionus.

Authors:  Claudia Ma Carareto
Journal:  Mob Genet Elements       Date:  2011-09-01

3.  Characterization of transcriptional activation and inserted-into-gene preference of various transposable elements in the Brassica species.

Authors:  Caihua Gao; Meili Xiao; Lingyan Jiang; Jiana Li; Jiaming Yin; Xiaodong Ren; Wei Qian; Ortegón Oscar; Donghui Fu; Zhanglin Tang
Journal:  Mol Biol Rep       Date:  2012-02-11       Impact factor: 2.316

4.  What's in a genome? The C-value enigma and the evolution of eukaryotic genome content.

Authors:  Tyler A Elliott; T Ryan Gregory
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2015-09-26       Impact factor: 6.237

5.  Characterization of irritans mariner-like elements in the olive fruit fly Bactrocera oleae (Diptera: Tephritidae): evolutionary implications.

Authors:  Wafa Ben Lazhar-Ajroud; Aurore Caruso; Maha Mezghani; Maryem Bouallegue; Emmanuelle Tastard; Françoise Denis; Jacques-Deric Rouault; Hanem Makni; Pierre Capy; Benoît Chénais; Mohamed Makni; Nathalie Casse
Journal:  Naturwissenschaften       Date:  2016-07-08

6.  An Atypical AAA+ ATPase Assembly Controls Efficient Transposition through DNA Remodeling and Transposase Recruitment.

Authors:  Ernesto Arias-Palomo; James M Berger
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

Review 7.  Repeat-Induced Point Mutation and Other Genome Defense Mechanisms in Fungi.

Authors:  Eugene Gladyshev
Journal:  Microbiol Spectr       Date:  2017-07

8.  A resurrected mammalian hAT transposable element and a closely related insect element are highly active in human cell culture.

Authors:  Xianghong Li; Hosam Ewis; Robert H Hice; Nirav Malani; Nicole Parker; Liqin Zhou; Cédric Feschotte; Frederic D Bushman; Peter W Atkinson; Nancy L Craig
Journal:  Proc Natl Acad Sci U S A       Date:  2012-10-22       Impact factor: 11.205

9.  Non-exhaustive DNA methylation-mediated transposon silencing in the black truffle genome, a complex fungal genome with massive repeat element content.

Authors:  Barbara Montanini; Pao-Yang Chen; Marco Morselli; Artur Jaroszewicz; David Lopez; Francis Martin; Simone Ottonello; Matteo Pellegrini
Journal:  Genome Biol       Date:  2014-07-31       Impact factor: 13.583

Review 10.  The functional basis of adaptive evolution in chemostats.

Authors:  David Gresham; Jungeui Hong
Journal:  FEMS Microbiol Rev       Date:  2014-12-04       Impact factor: 16.408

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