Literature DB >> 33597680

Technical and imaging factors influencing performance of deep learning systems for diabetic retinopathy.

Michelle Y T Yip1,2, Gilbert Lim1,3, Zhan Wei Lim3, Quang D Nguyen1, Crystal C Y Chong1, Marco Yu1, Valentina Bellemo1, Yuchen Xie1, Xin Qi Lee1, Haslina Hamzah1, Jinyi Ho1, Tien-En Tan1, Charumathi Sabanayagam1,2, Andrzej Grzybowski4,5, Gavin S W Tan1,2, Wynne Hsu3, Mong Li Lee3, Tien Yin Wong1,2, Daniel S W Ting6,7,8.   

Abstract

Deep learning (DL) has been shown to be effective in developing diabetic retinopathy (DR) algorithms, possibly tackling financial and manpower challenges hindering implementation of DR screening. However, our systematic review of the literature reveals few studies studied the impact of different factors on these DL algorithms, that are important for clinical deployment in real-world settings. Using 455,491 retinal images, we evaluated two technical and three image-related factors in detection of referable DR. For technical factors, the performances of four DL models (VGGNet, ResNet, DenseNet, Ensemble) and two computational frameworks (Caffe, TensorFlow) were evaluated while for image-related factors, we evaluated image compression levels (reducing image size, 350, 300, 250, 200, 150 KB), number of fields (7-field, 2-field, 1-field) and media clarity (pseudophakic vs phakic). In detection of referable DR, four DL models showed comparable diagnostic performance (AUC 0.936-0.944). To develop the VGGNet model, two computational frameworks had similar AUC (0.936). The DL performance dropped when image size decreased below 250 KB (AUC 0.936, 0.900, p < 0.001). The DL performance performed better when there were increased number of fields (dataset 1: 2-field vs 1-field-AUC 0.936 vs 0.908, p < 0.001; dataset 2: 7-field vs 2-field vs 1-field, AUC 0.949 vs 0.911 vs 0.895). DL performed better in the pseudophakic than phakic eyes (AUC 0.918 vs 0.833, p < 0.001). Various image-related factors play more significant roles than technical factors in determining the diagnostic performance, suggesting the importance of having robust training and testing datasets for DL training and deployment in the real-world settings.

Year:  2020        PMID: 33597680     DOI: 10.1038/s41746-020-0247-1

Source DB:  PubMed          Journal:  NPJ Digit Med        ISSN: 2398-6352


  38 in total

Review 1.  Deep learning for healthcare: review, opportunities and challenges.

Authors:  Riccardo Miotto; Fei Wang; Shuang Wang; Xiaoqian Jiang; Joel T Dudley
Journal:  Brief Bioinform       Date:  2018-11-27       Impact factor: 11.622

2.  Artificial Intelligence With Deep Learning Technology Looks Into Diabetic Retinopathy Screening.

Authors:  Tien Yin Wong; Neil M Bressler
Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

3.  Development and Validation of a Deep Learning Algorithm for Detection of Diabetic Retinopathy in Retinal Fundus Photographs.

Authors:  Varun Gulshan; Lily Peng; Marc Coram; Martin C Stumpe; Derek Wu; Arunachalam Narayanaswamy; Subhashini Venugopalan; Kasumi Widner; Tom Madams; Jorge Cuadros; Ramasamy Kim; Rajiv Raman; Philip C Nelson; Jessica L Mega; Dale R Webster
Journal:  JAMA       Date:  2016-12-13       Impact factor: 56.272

4.  Frequency of Evidence-Based Screening for Diabetic Retinopathy.

Authors:  Ecosse L Lamoureux; Hugh Taylor; Tien Y Wong
Journal:  N Engl J Med       Date:  2017-07-13       Impact factor: 91.245

5.  AI for medical imaging goes deep.

Authors:  Daniel S W Ting; Yong Liu; Philippe Burlina; Xinxing Xu; Neil M Bressler; Tien Y Wong
Journal:  Nat Med       Date:  2018-05       Impact factor: 53.440

6.  How effective are treatments for diabetic retinopathy?

Authors:  F L Ferris
Journal:  JAMA       Date:  1993-03-10       Impact factor: 56.272

7.  Development and Validation of a Deep Learning System for Diabetic Retinopathy and Related Eye Diseases Using Retinal Images From Multiethnic Populations With Diabetes.

Authors:  Daniel Shu Wei Ting; Carol Yim-Lui Cheung; Gilbert Lim; Gavin Siew Wei Tan; Nguyen D Quang; Alfred Gan; Haslina Hamzah; Renata Garcia-Franco; Ian Yew San Yeo; Shu Yen Lee; Edmund Yick Mun Wong; Charumathi Sabanayagam; Mani Baskaran; Farah Ibrahim; Ngiap Chuan Tan; Eric A Finkelstein; Ecosse L Lamoureux; Ian Y Wong; Neil M Bressler; Sobha Sivaprasad; Rohit Varma; Jost B Jonas; Ming Guang He; Ching-Yu Cheng; Gemmy Chui Ming Cheung; Tin Aung; Wynne Hsu; Mong Li Lee; Tien Yin Wong
Journal:  JAMA       Date:  2017-12-12       Impact factor: 56.272

Review 8.  Diabetic retinopathy.

Authors:  Ning Cheung; Paul Mitchell; Tien Yin Wong
Journal:  Lancet       Date:  2010-06-26       Impact factor: 79.321

Review 9.  Global Estimates on the Number of People Blind or Visually Impaired by Diabetic Retinopathy: A Meta-analysis From 1990 to 2010.

Authors:  Janet L Leasher; Rupert R A Bourne; Seth R Flaxman; Jost B Jonas; Jill Keeffe; Kovin Naidoo; Konrad Pesudovs; Holly Price; Richard A White; Tien Y Wong; Serge Resnikoff; Hugh R Taylor
Journal:  Diabetes Care       Date:  2016-09       Impact factor: 19.112

10.  Automated Grading of Age-Related Macular Degeneration From Color Fundus Images Using Deep Convolutional Neural Networks.

Authors:  Philippe M Burlina; Neil Joshi; Michael Pekala; Katia D Pacheco; David E Freund; Neil M Bressler
Journal:  JAMA Ophthalmol       Date:  2017-11-01       Impact factor: 7.389

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