Literature DB >> 28481991

Deep learning for healthcare: review, opportunities and challenges.

Riccardo Miotto1, Fei Wang2, Shuang Wang3, Xiaoqian Jiang3, Joel T Dudley4.   

Abstract

Gaining knowledge and actionable insights from complex, high-dimensional and heterogeneous biomedical data remains a key challenge in transforming health care. Various types of data have been emerging in modern biomedical research, including electronic health records, imaging, -omics, sensor data and text, which are complex, heterogeneous, poorly annotated and generally unstructured. Traditional data mining and statistical learning approaches typically need to first perform feature engineering to obtain effective and more robust features from those data, and then build prediction or clustering models on top of them. There are lots of challenges on both steps in a scenario of complicated data and lacking of sufficient domain knowledge. The latest advances in deep learning technologies provide new effective paradigms to obtain end-to-end learning models from complex data. In this article, we review the recent literature on applying deep learning technologies to advance the health care domain. Based on the analyzed work, we suggest that deep learning approaches could be the vehicle for translating big biomedical data into improved human health. However, we also note limitations and needs for improved methods development and applications, especially in terms of ease-of-understanding for domain experts and citizen scientists. We discuss such challenges and suggest developing holistic and meaningful interpretable architectures to bridge deep learning models and human interpretability.

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Mesh:

Year:  2018        PMID: 28481991      PMCID: PMC6455466          DOI: 10.1093/bib/bbx044

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  56 in total

1.  A fast learning algorithm for deep belief nets.

Authors:  Geoffrey E Hinton; Simon Osindero; Yee-Whye Teh
Journal:  Neural Comput       Date:  2006-07       Impact factor: 2.026

2.  Reducing the dimensionality of data with neural networks.

Authors:  G E Hinton; R R Salakhutdinov
Journal:  Science       Date:  2006-07-28       Impact factor: 47.728

Review 3.  Predictive data mining in clinical medicine: current issues and guidelines.

Authors:  Riccardo Bellazzi; Blaz Zupan
Journal:  Int J Med Inform       Date:  2006-12-26       Impact factor: 4.046

Review 4.  Representation learning: a review and new perspectives.

Authors:  Yoshua Bengio; Aaron Courville; Pascal Vincent
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2013-08       Impact factor: 6.226

5.  Data-driven prediction of drug effects and interactions.

Authors:  Nicholas P Tatonetti; Patrick P Ye; Roxana Daneshjou; Russ B Altman
Journal:  Sci Transl Med       Date:  2012-03-14       Impact factor: 17.956

Review 6.  Mining electronic health records: towards better research applications and clinical care.

Authors:  Peter B Jensen; Lars J Jensen; Søren Brunak
Journal:  Nat Rev Genet       Date:  2012-05-02       Impact factor: 53.242

7.  Differentially Private Empirical Risk Minimization.

Authors:  Kamalika Chaudhuri; Claire Monteleoni; Anand D Sarwate
Journal:  J Mach Learn Res       Date:  2011-03       Impact factor: 3.654

8.  Detection of Conflicts and Inconsistencies in Taxonomy-based Authorization Policies.

Authors:  Apurva Mohan; Douglas M Blough; Tahsin Kurc; Andrew Post; Joel Saltz
Journal:  Proceedings (IEEE Int Conf Bioinformatics Biomed)       Date:  2011-11-12

9.  Computational phenotype discovery using unsupervised feature learning over noisy, sparse, and irregular clinical data.

Authors:  Thomas A Lasko; Joshua C Denny; Mia A Levy
Journal:  PLoS One       Date:  2013-06-24       Impact factor: 3.240

10.  Next-generation phenotyping of electronic health records.

Authors:  George Hripcsak; David J Albers
Journal:  J Am Med Inform Assoc       Date:  2012-09-06       Impact factor: 4.497

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  241 in total

1.  Application of deep learning to the diagnosis of cervical lymph node metastasis from thyroid cancer with CT.

Authors:  Jeong Hoon Lee; Eun Ju Ha; Ju Han Kim
Journal:  Eur Radiol       Date:  2019-03-15       Impact factor: 5.315

2.  Neural networks and deep learning: a brief introduction.

Authors:  Adrian Iustin Georgevici; Marius Terblanche
Journal:  Intensive Care Med       Date:  2019-02-06       Impact factor: 17.440

3.  Technical and imaging factors influencing performance of deep learning systems for diabetic retinopathy.

Authors:  Michelle Y T Yip; Gilbert Lim; Zhan Wei Lim; Quang D Nguyen; Crystal C Y Chong; Marco Yu; Valentina Bellemo; Yuchen Xie; Xin Qi Lee; Haslina Hamzah; Jinyi Ho; Tien-En Tan; Charumathi Sabanayagam; Andrzej Grzybowski; Gavin S W Tan; Wynne Hsu; Mong Li Lee; Tien Yin Wong; Daniel S W Ting
Journal:  NPJ Digit Med       Date:  2020-03-23

4.  Recurrent neural networks for classifying relations in clinical notes.

Authors:  Yuan Luo
Journal:  J Biomed Inform       Date:  2017-07-08       Impact factor: 6.317

Review 5.  Deep learning aided decision support for pulmonary nodules diagnosing: a review.

Authors:  Yixin Yang; Xiaoyi Feng; Wenhao Chi; Zhengyang Li; Wenzhe Duan; Haiping Liu; Wenhua Liang; Wei Wang; Ping Chen; Jianxing He; Bo Liu
Journal:  J Thorac Dis       Date:  2018-04       Impact factor: 2.895

6.  Classifying relations in clinical narratives using segment graph convolutional and recurrent neural networks (Seg-GCRNs).

Authors:  Yifu Li; Ran Jin; Yuan Luo
Journal:  J Am Med Inform Assoc       Date:  2019-03-01       Impact factor: 4.497

Review 7.  Artificial Intelligence for Mental Health and Mental Illnesses: an Overview.

Authors:  Sarah Graham; Colin Depp; Ellen E Lee; Camille Nebeker; Xin Tu; Ho-Cheol Kim; Dilip V Jeste
Journal:  Curr Psychiatry Rep       Date:  2019-11-07       Impact factor: 5.285

8.  From Genotype to Phenotype: Augmenting Deep Learning with Networks and Systems Biology.

Authors:  Vahid H Gazestani; Nathan E Lewis
Journal:  Curr Opin Syst Biol       Date:  2019-04-04

Review 9.  A Review of Predictive Analytics Solutions for Sepsis Patients.

Authors:  Andrew K Teng; Adam B Wilcox
Journal:  Appl Clin Inform       Date:  2020-05-27       Impact factor: 2.342

10.  A study of generalizability of recurrent neural network-based predictive models for heart failure onset risk using a large and heterogeneous EHR data set.

Authors:  Laila Rasmy; Yonghui Wu; Ningtao Wang; Xin Geng; W Jim Zheng; Fei Wang; Hulin Wu; Hua Xu; Degui Zhi
Journal:  J Biomed Inform       Date:  2018-06-15       Impact factor: 6.317

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