Literature DB >> 33589838

Imaging-based screens of pool-synthesized cell libraries.

Michael Lawson1, Johan Elf2.   

Abstract

Mapping a genetic perturbation to a change in phenotype is at the core of biological research. Advances in microscopy have transformed these studies, but they have largely been confined to examining a few strains or cell lines at a time. In parallel, there has been a revolution in creating synthetic libraries of genetically altered cells with relative ease. Here we describe methods that combine these powerful tools to perform live-cell imaging of pool-generated strain libraries for improved biological discovery.

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Year:  2021        PMID: 33589838     DOI: 10.1038/s41592-020-01053-8

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  85 in total

1.  Subcellular localization of the yeast proteome.

Authors:  Anuj Kumar; Seema Agarwal; John A Heyman; Sandra Matson; Matthew Heidtman; Stacy Piccirillo; Lara Umansky; Amar Drawid; Ronald Jansen; Yang Liu; Kei-Hoi Cheung; Perry Miller; Mark Gerstein; G Shirleen Roeder; Michael Snyder
Journal:  Genes Dev       Date:  2002-03-15       Impact factor: 11.361

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Journal:  Nature       Date:  1996-02-15       Impact factor: 49.962

Review 3.  Single-Molecule Kinetics in Living Cells.

Authors:  Johan Elf; Irmeli Barkefors
Journal:  Annu Rev Biochem       Date:  2018-10-25       Impact factor: 23.643

4.  Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.

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Journal:  Science       Date:  1999-08-06       Impact factor: 47.728

5.  Quantitative phenotypic analysis of yeast deletion mutants using a highly parallel molecular bar-coding strategy.

Authors:  D D Shoemaker; D A Lashkari; D Morris; M Mittmann; R W Davis
Journal:  Nat Genet       Date:  1996-12       Impact factor: 38.330

6.  A programmable dual-RNA-guided DNA endonuclease in adaptive bacterial immunity.

Authors:  Martin Jinek; Krzysztof Chylinski; Ines Fonfara; Michael Hauer; Jennifer A Doudna; Emmanuelle Charpentier
Journal:  Science       Date:  2012-06-28       Impact factor: 47.728

7.  Multiplex genome engineering using CRISPR/Cas systems.

Authors:  Le Cong; F Ann Ran; David Cox; Shuailiang Lin; Robert Barretto; Naomi Habib; Patrick D Hsu; Xuebing Wu; Wenyan Jiang; Luciano A Marraffini; Feng Zhang
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

8.  RNA-guided human genome engineering via Cas9.

Authors:  Prashant Mali; Luhan Yang; Kevin M Esvelt; John Aach; Marc Guell; James E DiCarlo; Julie E Norville; George M Church
Journal:  Science       Date:  2013-01-03       Impact factor: 47.728

9.  The genetic landscape of a cell.

Authors:  Michael Costanzo; Anastasia Baryshnikova; Jeremy Bellay; Yungil Kim; Eric D Spear; Carolyn S Sevier; Huiming Ding; Judice L Y Koh; Kiana Toufighi; Sara Mostafavi; Jeany Prinz; Robert P St Onge; Benjamin VanderSluis; Taras Makhnevych; Franco J Vizeacoumar; Solmaz Alizadeh; Sondra Bahr; Renee L Brost; Yiqun Chen; Murat Cokol; Raamesh Deshpande; Zhijian Li; Zhen-Yuan Lin; Wendy Liang; Michaela Marback; Jadine Paw; Bryan-Joseph San Luis; Ermira Shuteriqi; Amy Hin Yan Tong; Nydia van Dyk; Iain M Wallace; Joseph A Whitney; Matthew T Weirauch; Guoqing Zhong; Hongwei Zhu; Walid A Houry; Michael Brudno; Sasan Ragibizadeh; Balázs Papp; Csaba Pál; Frederick P Roth; Guri Giaever; Corey Nislow; Olga G Troyanskaya; Howard Bussey; Gary D Bader; Anne-Claude Gingras; Quaid D Morris; Philip M Kim; Chris A Kaiser; Chad L Myers; Brenda J Andrews; Charles Boone
Journal:  Science       Date:  2010-01-22       Impact factor: 47.728

Review 10.  Lineage tracing meets single-cell omics: opportunities and challenges.

Authors:  Daniel E Wagner; Allon M Klein
Journal:  Nat Rev Genet       Date:  2020-03-31       Impact factor: 53.242

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  1 in total

Review 1.  Tools for Decoding Ubiquitin Signaling in DNA Repair.

Authors:  Benjamin Foster; Martin Attwood; Ian Gibbs-Seymour
Journal:  Front Cell Dev Biol       Date:  2021-12-07
  1 in total

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