Literature DB >> 30359080

Single-Molecule Kinetics in Living Cells.

Johan Elf1, Irmeli Barkefors1.   

Abstract

In the past decades, advances in microscopy have made it possible to study the dynamics of individual biomolecules in vitro and resolve intramolecular kinetics that would otherwise be hidden in ensemble averages. More recently, single-molecule methods have been used to image, localize, and track individually labeled macromolecules in the cytoplasm of living cells, allowing investigations of intermolecular kinetics under physiologically relevant conditions. In this review, we illuminate the particular advantages of single-molecule techniques when studying kinetics in living cells and discuss solutions to specific challenges associated with these methods.

Keywords:  fluorescence labeling; simulated microscopy; single-molecule kinetics; single-molecule microscopy; single-molecule tracking; spot localization

Mesh:

Year:  2018        PMID: 30359080     DOI: 10.1146/annurev-biochem-013118-110801

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  19 in total

1.  Anomalous and heterogeneous DNA transport in biomimetic cytoskeleton networks.

Authors:  Jonathan Garamella; Kathryn Regan; Gina Aguirre; Ryan J McGorty; Rae M Robertson-Anderson
Journal:  Soft Matter       Date:  2020-06-19       Impact factor: 3.679

2.  Single-Particle Diffusion Characterization by Deep Learning.

Authors:  Naor Granik; Lucien E Weiss; Elias Nehme; Maayan Levin; Michael Chein; Eran Perlson; Yael Roichman; Yoav Shechtman
Journal:  Biophys J       Date:  2019-06-22       Impact factor: 4.033

3.  Identification of Multiple Kinetic Populations of DNA-Binding Proteins in Live Cells.

Authors:  Han N Ho; Daniel Zalami; Jürgen Köhler; Antoine M van Oijen; Harshad Ghodke
Journal:  Biophys J       Date:  2019-07-19       Impact factor: 4.033

4.  Diffusion of DNA-Binding Species in the Nucleus: A Transient Anomalous Subdiffusion Model.

Authors:  Michael J Saxton
Journal:  Biophys J       Date:  2020-04-04       Impact factor: 4.033

5.  Single-molecule localization microscopy.

Authors:  Mickaël Lelek; Melina T Gyparaki; Gerti Beliu; Florian Schueder; Juliette Griffié; Suliana Manley; Ralf Jungmann; Markus Sauer; Melike Lakadamyali; Christophe Zimmer
Journal:  Nat Rev Methods Primers       Date:  2021-06-03

6.  Quantifying biochemical reaction rates from static population variability within incompletely observed complex networks.

Authors:  Timon Wittenstein; Nava Leibovich; Andreas Hilfinger
Journal:  PLoS Comput Biol       Date:  2022-06-22       Impact factor: 4.779

Review 7.  Imaging-based screens of pool-synthesized cell libraries.

Authors:  Michael Lawson; Johan Elf
Journal:  Nat Methods       Date:  2021-02-15       Impact factor: 28.547

8.  Single molecule characterization of the binding kinetics of a transcription factor and its modulation by DNA sequence and methylation.

Authors:  Hadeel Khamis; Sergei Rudnizky; Philippa Melamed; Ariel Kaplan
Journal:  Nucleic Acids Res       Date:  2021-11-08       Impact factor: 16.971

Review 9.  Single-molecule tracking of transcription protein dynamics in living cells: seeing is believing, but what are we seeing?

Authors:  Timothée Lionnet; Carl Wu
Journal:  Curr Opin Genet Dev       Date:  2021-01-07       Impact factor: 4.665

Review 10.  The needle and the haystack: single molecule tracking to probe the transcription factor search in eukaryotes.

Authors:  Matteo Mazzocca; Tom Fillot; Alessia Loffreda; Daniela Gnani; Davide Mazza
Journal:  Biochem Soc Trans       Date:  2021-06-30       Impact factor: 5.407

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