Literature DB >> 33589789

Illuminating the dark conformational space of macrocycles using dominant rotors.

Diego B Diaz1, Solomon D Appavoo1, Anastasia F Bogdanchikova1, Yury Lebedev1, Timothy J McTiernan1, Gabriel Dos Passos Gomes1,2, Andrei K Yudin3.   

Abstract

Three-dimensional conformation is the primary determinant of molecular properties. The thermal energy available at room temperature typically equilibrates the accessible conformational states. Here, we introduce a method for isolating unique and previously understudied conformations of macrocycles. The observation of unusual conformations of 16- to 22-membered rings has been made possible by controlling their interconversion using dominant rotors, which represent tunable atropisomeric constituents with relatively high rotational barriers. Density functional theory and in situ NMR measurements suggest that dominant rotor candidates for the amino-acid-based structures considered here should possess a rotational energy barrier of at least 25 kcal mol-1. Notable differences in the geometries of the macrocycle conformations were identified by NMR spectroscopy and X-ray crystallography. There is evidence that amino acid residues can be forced into rare turn motifs not observed in the corresponding linear counterparts and homodetic rings. These findings should unlock new avenues for studying the conformation-activity relationships of bioactive molecules.

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Year:  2021        PMID: 33589789     DOI: 10.1038/s41557-020-00620-y

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  47 in total

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Journal:  Nat Chem       Date:  2018-05-21       Impact factor: 24.427

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3.  High-Yielding Flow Synthesis of a Macrocyclic Molecular Hinge.

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4.  Well-Tempered Metadynamics Simulations Predict the Structural and Dynamic Properties of a Chiral 24-Atom Macrocycle in Solution.

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