Literature DB >> 33587127

Sexual Dimorphism through the Lens of Genome Manipulation, Forward Genetics, and Spatiotemporal Sequencing.

Katja R Kasimatis1, Santiago Sánchez-Ramírez1, Zachary C Stevenson2.   

Abstract

Sexual reproduction often leads to selection that favors the evolution of sex-limited traits or sex-specific variation for shared traits. These sexual dimorphisms manifest due to sex-specific genetic architectures and sex-biased gene expression across development, yet the molecular mechanisms underlying these patterns are largely unknown. The first step is to understand how sexual dimorphisms arise across the genotype-phenotype-fitness map. The emergence of "4D genome technologies" allows for efficient, high-throughput, and cost-effective manipulation and observations of this process. Studies of sexual dimorphism will benefit from combining these technological advances (e.g., precision genome editing, inducible transgenic systems, and single-cell RNA sequencing) with clever experiments inspired by classic designs (e.g., bulked segregant analysis, experimental evolution, and pedigree tracing). This perspective poses a synthetic view of how manipulative approaches coupled with cutting-edge observational methods and evolutionary theory are poised to uncover the molecular genetic basis of sexual dimorphism with unprecedented resolution. We outline hypothesis-driven experimental paradigms for identifying genetic mechanisms of sexual dimorphism among tissues, across development, and over evolutionary time.
© The Author(s) 2020. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution.

Entities:  

Keywords:  CRISPR; experimental evolution; long-read sequencing; sexual antagonism; single-cell sequencing

Mesh:

Substances:

Year:  2021        PMID: 33587127      PMCID: PMC7883666          DOI: 10.1093/gbe/evaa243

Source DB:  PubMed          Journal:  Genome Biol Evol        ISSN: 1759-6653            Impact factor:   3.416


  118 in total

Review 1.  Molecular spandrels: tests of adaptation at the genetic level.

Authors:  Rowan D H Barrett; Hopi E Hoekstra
Journal:  Nat Rev Genet       Date:  2011-10-18       Impact factor: 53.242

2.  Characterization of the single-cell transcriptional landscape by highly multiplex RNA-seq.

Authors:  Saiful Islam; Una Kjällquist; Annalena Moliner; Pawel Zajac; Jian-Bing Fan; Peter Lönnerberg; Sten Linnarsson
Journal:  Genome Res       Date:  2011-05-04       Impact factor: 9.043

3.  Distinct regulatory programs establish widespread sex-specific alternative splicing in Drosophila melanogaster.

Authors:  Britta Hartmann; Robert Castelo; Belén Miñana; Erin Peden; Marco Blanchette; Donald C Rio; Ravinder Singh; Juan Valcárcel
Journal:  RNA       Date:  2011-01-13       Impact factor: 4.942

Review 4.  The next generation of CRISPR-Cas technologies and applications.

Authors:  Adrian Pickar-Oliver; Charles A Gersbach
Journal:  Nat Rev Mol Cell Biol       Date:  2019-08       Impact factor: 94.444

5.  Sexual and temporal dynamics of molecular evolution in C. elegans development.

Authors:  Asher D Cutter; Samuel Ward
Journal:  Mol Biol Evol       Date:  2004-09-15       Impact factor: 16.240

6.  Landscape of X chromosome inactivation across human tissues.

Authors:  Taru Tukiainen; Alexandra-Chloé Villani; Angela Yen; Manuel A Rivas; Jamie L Marshall; Rahul Satija; Matt Aguirre; Laura Gauthier; Mark Fleharty; Andrew Kirby; Beryl B Cummings; Stephane E Castel; Konrad J Karczewski; François Aguet; Andrea Byrnes; Tuuli Lappalainen; Aviv Regev; Kristin G Ardlie; Nir Hacohen; Daniel G MacArthur
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

7.  Sex difference in pathology of the ageing gut mediates the greater response of female lifespan to dietary restriction.

Authors:  Jennifer C Regan; Mobina Khericha; Adam J Dobson; Ekin Bolukbasi; Nattaphong Rattanavirotkul; Linda Partridge
Journal:  Elife       Date:  2016-02-16       Impact factor: 8.140

8.  cGAL, a temperature-robust GAL4-UAS system for Caenorhabditis elegans.

Authors:  Han Wang; Jonathan Liu; Shahla Gharib; Cynthia M Chai; Erich M Schwarz; Navin Pokala; Paul W Sternberg
Journal:  Nat Methods       Date:  2016-12-19       Impact factor: 28.547

9.  A High-Density Linkage Map Reveals Sexual Dimorphism in Recombination Landscapes in Red Deer (Cervus elaphus).

Authors:  Susan E Johnston; Jisca Huisman; Philip A Ellis; Josephine M Pemberton
Journal:  G3 (Bethesda)       Date:  2017-08-07       Impact factor: 3.154

10.  Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis.

Authors:  Lovorka Stojic; Aaron T L Lun; Jasmin Mangei; Patrice Mascalchi; Valentina Quarantotti; Alexis R Barr; Chris Bakal; John C Marioni; Fanni Gergely; Duncan T Odom
Journal:  Nucleic Acids Res       Date:  2018-07-06       Impact factor: 16.971

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