Literature DB >> 33585390

A Synergetic R-Shiny Portal for Modeling and Tracking of COVID-19 Data.

Mahdi Salehi1, Mohammad Arashi2,3, Andriette Bekker3, Johan Ferreira3, Ding-Geng Chen3, Foad Esmaeili1, Motala Frances3.   

Abstract

The purpose of this paper is to introduce a useful online interactive dashboard (https://mahdisalehi.shinyapps.io/Covid19Dashboard/) that visualize and follow confirmed cases of COVID-19 in real-time. The dashboard was made publicly available on 6 April 2020 to illustrate the counts of confirmed cases, deaths, and recoveries of COVID-19 at the level of country or continent. This dashboard is intended as a user-friendly dashboard for researchers as well as the general public to track the COVID-19 pandemic, and is generated from trusted data sources and built in open-source R software (Shiny in particular); ensuring a high sense of transparency and reproducibility. The R Shiny framework serves as a platform for visualization and analysis of the data, as well as an advance to capitalize on existing data curation to support and enable open science. Coded analysis here includes logistic and Gompertz growth models, as two mathematical tools for predicting the future of the COVID-19 pandemic, as well as the Moran's index metric, which gives a spatial perspective via heat maps that may assist in the identification of latent responses and behavioral patterns. This analysis provides real-time statistical application aiming to make sense to academic- and public consumers of the large amount of data that is being accumulated due to the COVID-19 pandemic.
Copyright © 2021 Salehi, Arashi, Bekker, Ferreira, Chen, Esmaeili and Frances.

Entities:  

Keywords:  COVID-19; dashboard; gompertz growth model; logistic growth model; moran's index; open science; r; shiny

Mesh:

Year:  2021        PMID: 33585390      PMCID: PMC7873562          DOI: 10.3389/fpubh.2020.623624

Source DB:  PubMed          Journal:  Front Public Health        ISSN: 2296-2565


  9 in total

1.  Notes on continuous stochastic phenomena.

Authors:  P A P MORAN
Journal:  Biometrika       Date:  1950-06       Impact factor: 2.445

2.  Use of local Moran's I and GIS to identify pollution hotspots of Pb in urban soils of Galway, Ireland.

Authors:  Chaosheng Zhang; Lin Luo; Weilin Xu; Valerie Ledwith
Journal:  Sci Total Environ       Date:  2008-04-28       Impact factor: 7.963

3.  Web-Based Dashboard for the Interactive Visualization and Analysis of National Risk-Standardized Mortality Rates of Sepsis in the US.

Authors:  Meng-Tse Lee; Fong-Ci Lin; Szu-Ta Chen; Wan-Ting Hsu; Samuel Lin; Tzer-Shyong Chen; Feipei Lai; Chien-Chang Lee
Journal:  J Med Syst       Date:  2020-01-11       Impact factor: 4.460

4.  A planetary health perspective on COVID-19: a call for papers.

Authors:  Alastair Brown; Richard Horton
Journal:  Lancet       Date:  2020-04-04       Impact factor: 79.321

5.  The challenges of modeling and forecasting the spread of COVID-19.

Authors:  Andrea L Bertozzi; Elisa Franco; George Mohler; Martin B Short; Daniel Sledge
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-02       Impact factor: 11.205

6.  Outbreak analysis with a logistic growth model shows COVID-19 suppression dynamics in China.

Authors:  Yi Zou; Stephen Pan; Peng Zhao; Lei Han; Xiaoxiang Wang; Lia Hemerik; Johannes Knops; Wopke van der Werf
Journal:  PLoS One       Date:  2020-06-29       Impact factor: 3.240

7.  A spatial analysis of the COVID-19 period prevalence in U.S. counties through June 28, 2020: where geography matters?

Authors:  Feinuo Sun; Stephen A Matthews; Tse-Chuan Yang; Ming-Hsiao Hu
Journal:  Ann Epidemiol       Date:  2020-07-28       Impact factor: 3.797

8.  An interactive web-based dashboard to track COVID-19 in real time.

Authors:  Ensheng Dong; Hongru Du; Lauren Gardner
Journal:  Lancet Infect Dis       Date:  2020-02-19       Impact factor: 25.071

Review 9.  COVID-19 and Italy: what next?

Authors:  Andrea Remuzzi; Giuseppe Remuzzi
Journal:  Lancet       Date:  2020-03-13       Impact factor: 79.321

  9 in total
  9 in total

1.  Setting Requirements for a Dashboard to Inform Portuguese Decision-Makers About Environment Health in an Urban Setting.

Authors:  Marta Salgado; Paulo Nogueira; Anália Torres; Mónica D Oliveira
Journal:  Front Public Health       Date:  2022-06-10

2.  A Web Application for Biomedical Text Mining of Scientific Literature Associated with Coronavirus-Related Syndromes: Coronavirus Finder.

Authors:  Dagoberto Armenta-Medina; Aniel Jessica Leticia Brambila-Tapia; Sabino Miranda-Jiménez; Edel Rafael Rodea-Montero
Journal:  Diagnostics (Basel)       Date:  2022-04-02

3.  PandemonCAT: Monitoring the COVID-19 Pandemic in Catalonia, Spain.

Authors:  Somnath Chaudhuri; Gerard Giménez-Adsuar; Marc Saez; Maria A Barceló
Journal:  Int J Environ Res Public Health       Date:  2022-04-14       Impact factor: 4.614

4.  Factor analysis approach to classify COVID-19 datasets in several regions.

Authors:  Mohammad Reza Mahmoudi; Dumitru Baleanu; Shahab S Band; Amir Mosavi
Journal:  Results Phys       Date:  2021-03-22       Impact factor: 4.476

5.  Evaluating prediction of COVID-19 at provincial level of South Africa: a statistical perspective.

Authors:  Mohammad Arashi; Andriette Bekker; Mahdi Salehi; Sollie Millard; Tanita Botha; Mohammad Golpaygani
Journal:  Environ Sci Pollut Res Int       Date:  2021-11-09       Impact factor: 5.190

6.  Applications, features and key indicators for the development of Covid-19 dashboards: A systematic review study.

Authors:  Akram Vahedi; Hamid Moghaddasi; Farkhondeh Asadi; Azam Sadat Hosseini; Eslam Nazemi
Journal:  Inform Med Unlocked       Date:  2022-03-18

7.  Spatiotemporal analysis of the morbidity of global Omicron from November 2021 to February 2022.

Authors:  Yuelang Liang; Zijun Gong; Jiajia Guo; Qi Cheng; Zhenjiang Yao
Journal:  J Med Virol       Date:  2022-07-29       Impact factor: 20.693

8.  CONSENSUS: a Shiny application of dementia evaluation and reporting for the KU ADC longitudinal Clinical Cohort database.

Authors:  Palash Sharma; Robert N Montgomery; Rasinio S Graves; Kayla Meyer; Suzanne L Hunt; Eric D Vidoni; Jonathan D Mahnken; Russell H Swerdlow; Jeffrey M Burns; Dinesh Pal Mudaranthakam
Journal:  JAMIA Open       Date:  2021-08-02

9.  A Web-Based Application to Monitor and Inform about the COVID-19 Outbreak in Italy: The {COVID-19ita} Initiative.

Authors:  Corrado Lanera; Danila Azzolina; Francesco Pirotti; Ilaria Prosepe; Giulia Lorenzoni; Paola Berchialla; Dario Gregori
Journal:  Healthcare (Basel)       Date:  2022-03-03
  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.