Literature DB >> 33584354

Deep Learning-Based Natural Language Processing for Screening Psychiatric Patients.

Hong-Jie Dai1,2,3, Chu-Hsien Su4, You-Qian Lee1, You-Chen Zhang1, Chen-Kai Wang5, Chian-Jue Kuo6,7, Chi-Shin Wu4.   

Abstract

The introduction of pre-trained language models in natural language processing (NLP) based on deep learning and the availability of electronic health records (EHRs) presents a great opportunity to transfer the "knowledge" learned from data in the general domain to enable the analysis of unstructured textual data in clinical domains. This study explored the feasibility of applying NLP to a small EHR dataset to investigate the power of transfer learning to facilitate the process of patient screening in psychiatry. A total of 500 patients were randomly selected from a medical center database. Three annotators with clinical experience reviewed the notes to make diagnoses for major/minor depression, bipolar disorder, schizophrenia, and dementia to form a small and highly imbalanced corpus. Several state-of-the-art NLP methods based on deep learning along with pre-trained models based on shallow or deep transfer learning were adapted to develop models to classify the aforementioned diseases. We hypothesized that the models that rely on transferred knowledge would be expected to outperform the models learned from scratch. The experimental results demonstrated that the models with the pre-trained techniques outperformed the models without transferred knowledge by micro-avg. and macro-avg. F-scores of 0.11 and 0.28, respectively. Our results also suggested that the use of the feature dependency strategy to build multi-labeling models instead of problem transformation is superior considering its higher performance and simplicity in the training process.
Copyright © 2021 Dai, Su, Lee, Zhang, Wang, Kuo and Wu.

Entities:  

Keywords:  deep learning; natural language processing; patient screening; psychiatric diagnoses; text classification

Year:  2021        PMID: 33584354      PMCID: PMC7874001          DOI: 10.3389/fpsyt.2020.533949

Source DB:  PubMed          Journal:  Front Psychiatry        ISSN: 1664-0640            Impact factor:   4.157


  11 in total

1.  A context-aware approach for progression tracking of medical concepts in electronic medical records.

Authors:  Nai-Wen Chang; Hong-Jie Dai; Jitendra Jonnagaddala; Chih-Wei Chen; Richard Tzong-Han Tsai; Wen-Lian Hsu
Journal:  J Biomed Inform       Date:  2015-09-30       Impact factor: 6.317

2.  Classifying adverse drug reactions from imbalanced twitter data.

Authors:  Hong-Jie Dai; Chen-Kai Wang
Journal:  Int J Med Inform       Date:  2019-05-30       Impact factor: 4.046

3.  Adverse drug event and medication extraction in electronic health records via a cascading architecture with different sequence labeling models and word embeddings.

Authors:  Hong-Jie Dai; Chu-Hsien Su; Chi-Shin Wu
Journal:  J Am Med Inform Assoc       Date:  2020-01-01       Impact factor: 4.497

4.  Predicting Hospital Readmission via Cost-Sensitive Deep Learning.

Authors:  Haishuai Wang; Zhicheng Cui; Yixin Chen; Michael Avidan; Arbi Ben Abdallah; Alexander Kronzer
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2018-04-16       Impact factor: 3.710

Review 5.  Deep learning in clinical natural language processing: a methodical review.

Authors:  Stephen Wu; Kirk Roberts; Surabhi Datta; Jingcheng Du; Zongcheng Ji; Yuqi Si; Sarvesh Soni; Qiong Wang; Qiang Wei; Yang Xiang; Bo Zhao; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2020-03-01       Impact factor: 4.497

6.  Assessing the severity of positive valence symptoms in initial psychiatric evaluation records: Should we use convolutional neural networks?

Authors:  Hong-Jie Dai; Jitendra Jonnagaddala
Journal:  PLoS One       Date:  2018-10-16       Impact factor: 3.240

7.  Association of cerebrovascular events with antidepressant use: a case-crossover study.

Authors:  Chi-Shin Wu; Sheng-Chang Wang; Yu-Cheng Cheng; Susan Shur-Fen Gau
Journal:  Am J Psychiatry       Date:  2011-03-15       Impact factor: 18.112

8.  Using text mining to extract depressive symptoms and to validate the diagnosis of major depressive disorder from electronic health records.

Authors:  Chi-Shin Wu; Chian-Jue Kuo; Chu-Hsien Su; Shi-Heng Wang; Hong-Jie Dai
Journal:  J Affect Disord       Date:  2019-09-11       Impact factor: 4.839

9.  Clinical Assistant Diagnosis for Electronic Medical Record Based on Convolutional Neural Network.

Authors:  Zhongliang Yang; Yongfeng Huang; Yiran Jiang; Yuxi Sun; Yu-Jin Zhang; Pengcheng Luo
Journal:  Sci Rep       Date:  2018-04-20       Impact factor: 4.379

10.  Family member information extraction via neural sequence labeling models with different tag schemes.

Authors:  Hong-Jie Dai
Journal:  BMC Med Inform Decis Mak       Date:  2019-12-27       Impact factor: 2.796

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  2 in total

Review 1.  Natural Language Processing Methods and Bipolar Disorder: Scoping Review.

Authors:  Daisy Harvey; Fiona Lobban; Paul Rayson; Aaron Warner; Steven Jones
Journal:  JMIR Ment Health       Date:  2022-04-22

2.  A Deep Learning Approach to Estimate the Incidence of Infectious Disease Cases for Routinely Collected Ambulatory Records: The Example of Varicella-Zoster.

Authors:  Corrado Lanera; Ileana Baldi; Andrea Francavilla; Elisa Barbieri; Lara Tramontan; Antonio Scamarcia; Luigi Cantarutti; Carlo Giaquinto; Dario Gregori
Journal:  Int J Environ Res Public Health       Date:  2022-05-13       Impact factor: 4.614

  2 in total

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