| Literature DB >> 33584157 |
Abstract
The new coronavirus, known as COVID-19, first emerged in Wuhan, China, and since then has been transmitted to the whole world. Around 34 million people have been infected with COVID-19 virus so far, and nearly 1 million have died as a result of the virus. Resource shortages such as test kits and ventilator have arisen in many countries as the number of cases have increased beyond the control. Therefore, it has become very important to develop deep learning-based applications that automatically detect COVID-19 cases using chest X-ray images to assist specialists and radiologists in diagnosis. In this study, we propose a new approach based on deep LSTM model to automatically identify COVID-19 cases from X-ray images. Contrary to the transfer learning and deep feature extraction approaches, the deep LSTM model is an architecture, which is learned from scratch. Besides, the Sobel gradient and marker-controlled watershed segmentation operations are applied to raw images for increasing the performance of proposed model in the pre-processing stage. The experimental studies were performed on a combined public dataset constituted by gathering COVID-19, pneumonia and normal (healthy) chest X-ray images. The dataset was randomly separated into two sections as training and testing data. For training and testing, these separations were performed with the rates of 80%-20%, 70%-30% and 60%-40%, respectively. The best performance was achieved with 80% training and 20% testing rate. Moreover, the success rate was 100% for all performance criteria, which composed of accuracy, sensitivity, specificity and F-score. Consequently, the proposed model with pre-processing images ensured promising results on a small dataset compared to big data. Generally, the proposed model can significantly improve the present radiology based approaches and it can be very useful application for radiologists and specialists to help them in detection, quantity determination and tracing of COVID-19 cases throughout the pandemic.Entities:
Keywords: Automated detection; COVID-19; Deep LSTM model; Marker-controlled watershed segmentation
Year: 2021 PMID: 33584157 PMCID: PMC7868740 DOI: 10.1016/j.asoc.2021.107160
Source DB: PubMed Journal: Appl Soft Comput ISSN: 1568-4946 Impact factor: 6.725
Fig. 1CX image samples in the dataset.
Fig. 2Representation of the proposed method.
Fig. 3Structure of the LSTM cell.
Fig. 4The graphs of accuracy and loss values for the training and validation.
Fig. 5Optimized activation outputs of deep LSTM network.
Fig. 6Confusion matrix results for input images, MCWS images and the rates of training–testing..
Performance criteria for training–testing rate and types of images.
| training--testing rates (%) | Type of images | Classes | Sn | SP | Pr | F-score |
|---|---|---|---|---|---|---|
| 80–20 | MCWS | COVID-19 | 1,00 | 1,00 | 1,00 | 1,00 |
| Normal | 1,00 | 1,00 | 1,00 | 1,00 | ||
| Pneumonia | 1,00 | 1,00 | 1,00 | 1,00 | ||
| 70–30 | MCWS | COVID-19 | 0,96 | 0,99 | 0,98 | 0,97 |
| Normal | 1,00 | 0,98 | 0,94 | 0,97 | ||
| Pneumonia | 0,99 | 1,00 | 1,00 | 0,99 | ||
| 60–40 | MCWS | COVID-19 | 0,93 | 0,99 | 0,99 | 0,96 |
| Normal | 1,00 | 0,97 | 0,89 | 0,94 | ||
| Pneumonia | 0,99 | 1,00 | 1,00 | 1,00 | ||
| 80–20 | Raw | COVID-19 | 1,00 | 0,96 | 0,94 | 0,97 |
| Normal | 0,88 | 1,00 | 1,00 | 0,93 | ||
| Pneumonia | 1,00 | 1,00 | 1,00 | 1,00 | ||
| 70–30 | Raw | COVID-19 | 0,97 | 0,96 | 0,93 | 0,95 |
| Normal | 0,87 | 0,99 | 0,95 | 0,90 | ||
| Pneumonia | 1,00 | 1,00 | 1,00 | 1,00 | ||
| 60–40 | Raw | COVID-19 | 0,89 | 0,96 | 0,91 | 0,90 |
| Normal | 0,85 | 0,95 | 0,81 | 0,83 | ||
| Pneumonia | 1,00 | 1,00 | 1,00 | 1,00 |
The performance scores of the state-of-the-art methods and the proposed method.
| Methods | Dataset | Number of classes | Acc (%) | Se (%) | Sp (%) |
|---|---|---|---|---|---|
| DarkCovidNet | Public | 3 | 87.02 | 92.18 | 89.96 |
| COVIDiagnosis-Net | Public | 3 | 98.26 | 99.13 | – |
| The pretrained CNNs | Public | 3 | 93.48 | 92.85 | 98.75 |
| COVID-Net | Public | 3 | 92.64 | 91.37 | 95.76 |
| Deep features, ResNet-50, SVM | Public | 2 | 95.38 | – | – |
| Deep CNNs | Public | 2 | 90.00 | 100.00 | 80.00 |
| Deep CNN, ResNet-50 | Public | 2 | 98.00 | – | – |
| DRE-Net, deep CNN | Private | 2 | 86.00 | 96.00 | – |
| Deep CNN, Inception, transfer learning | Private | 2 | 89.50 | 87.00 | 88.00 |
| nCOVnet, transfer learning, deep CNN | Public | 2 | 88.10 | 97.62 | 89.13 |
| Deep CNN, SVM | Public | 3 | 98.97 | 89.39 | 99.75 |
| Proposed Method | Public | 3 | 100 | 100 | 100 |