Literature DB >> 33580198

Molecular and phenotypic analysis of rodent models reveals conserved and species-specific modulators of human sarcopenia.

Anastasiya Börsch1, Daniel J Ham2, Nitish Mittal1, Lionel A Tintignac3, Eugenia Migliavacca4, Jérôme N Feige4, Markus A Rüegg2, Mihaela Zavolan5.   

Abstract

Sarcopenia, the age-related loss of skeletal muscle mass and function, affects 5-13% of individuals aged over 60 years. While rodents are widely-used model organisms, which aspects of sarcopenia are recapitulated in different animal models is unknown. Here we generated a time series of phenotypic measurements and RNA sequencing data in mouse gastrocnemius muscle and analyzed them alongside analogous data from rats and humans. We found that rodents recapitulate mitochondrial changes observed in human sarcopenia, while inflammatory responses are conserved at pathway but not gene level. Perturbations in the extracellular matrix are shared by rats, while mice recapitulate changes in RNA processing and autophagy. We inferred transcription regulators of early and late transcriptome changes, which could be targeted therapeutically. Our study demonstrates that phenotypic measurements, such as muscle mass, are better indicators of muscle health than chronological age and should be considered when analyzing aging-related molecular data.

Entities:  

Year:  2021        PMID: 33580198      PMCID: PMC7881157          DOI: 10.1038/s42003-021-01723-z

Source DB:  PubMed          Journal:  Commun Biol        ISSN: 2399-3642


  84 in total

1.  Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources.

Authors:  Da Wei Huang; Brad T Sherman; Richard A Lempicki
Journal:  Nat Protoc       Date:  2009       Impact factor: 13.491

2.  Activation of nuclear receptor NR5A2 increases Glut4 expression and glucose metabolism in muscle cells.

Authors:  A Bolado-Carrancio; J A Riancho; J Sainz; J C Rodríguez-Rey
Journal:  Biochem Biophys Res Commun       Date:  2014-03-12       Impact factor: 3.575

3.  Decline in skeletal muscle mitochondrial function with aging in humans.

Authors:  Kevin R Short; Maureen L Bigelow; Jane Kahl; Ravinder Singh; Jill Coenen-Schimke; Sreekumar Raghavakaimal; K Sreekumaran Nair
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-30       Impact factor: 11.205

4.  Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt.

Authors:  Steffen Durinck; Paul T Spellman; Ewan Birney; Wolfgang Huber
Journal:  Nat Protoc       Date:  2009-07-23       Impact factor: 13.491

Review 5.  Sarcopenia: definition, epidemiology, and pathophysiology.

Authors:  Tae Nyun Kim; Kyung Mook Choi
Journal:  J Bone Metab       Date:  2013-05-13

6.  Does age matter? The impact of rodent age on study outcomes.

Authors:  Samuel J Jackson; Nick Andrews; Doug Ball; Ilaria Bellantuono; James Gray; Lamia Hachoumi; Alan Holmes; Judy Latcham; Anja Petrie; Paul Potter; Andrew Rice; Alison Ritchie; Michelle Stewart; Carol Strepka; Mark Yeoman; Kathryn Chapman
Journal:  Lab Anim       Date:  2016-07-10       Impact factor: 2.471

7.  The neuromuscular junction is a focal point of mTORC1 signaling in sarcopenia.

Authors:  Daniel J Ham; Anastasiya Börsch; Shuo Lin; Marco Thürkauf; Martin Weihrauch; Judith R Reinhard; Julien Delezie; Fabienne Battilana; Xueyong Wang; Marco S Kaiser; Maitea Guridi; Michael Sinnreich; Mark M Rich; Nitish Mittal; Lionel A Tintignac; Christoph Handschin; Mihaela Zavolan; Markus A Rüegg
Journal:  Nat Commun       Date:  2020-09-09       Impact factor: 14.919

Review 8.  Skeletal Muscle Extracellular Matrix - What Do We Know About Its Composition, Regulation, and Physiological Roles? A Narrative Review.

Authors:  Robert Csapo; Matthias Gumpenberger; Barbara Wessner
Journal:  Front Physiol       Date:  2020-03-19       Impact factor: 4.566

9.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

10.  The Laboratory Rat: Relating Its Age With Human's.

Authors:  Pallav Sengupta
Journal:  Int J Prev Med       Date:  2013-06
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  13 in total

Review 1.  Skeletal muscle aging, cellular senescence, and senotherapeutics: Current knowledge and future directions.

Authors:  Davis A Englund; Xu Zhang; Zaira Aversa; Nathan K LeBrasseur
Journal:  Mech Ageing Dev       Date:  2021-11-03       Impact factor: 5.432

2.  Transcription factor motif activity as a biomarker of muscle aging.

Authors:  Anastasiya Börsch; Mihaela Zavolan
Journal:  Am J Aging Sci Res       Date:  2021

3.  Brain aging is faithfully modelled in organotypic brain slices and accelerated by prions.

Authors:  Yingjun Liu; Assunta Senatore; Silvia Sorce; Mario Nuvolone; Jingjing Guo; Zeynep H Gümüş; Adriano Aguzzi
Journal:  Commun Biol       Date:  2022-06-08

Review 4.  Actions and interactions of IGF-I and MMPs during muscle regeneration.

Authors:  Hui Jean Kok; Elisabeth R Barton
Journal:  Semin Cell Dev Biol       Date:  2021-05-05       Impact factor: 7.499

5.  Molecular and phenotypic analysis of rodent models reveals conserved and species-specific modulators of human sarcopenia.

Authors:  Anastasiya Börsch; Daniel J Ham; Nitish Mittal; Lionel A Tintignac; Eugenia Migliavacca; Jérôme N Feige; Markus A Rüegg; Mihaela Zavolan
Journal:  Commun Biol       Date:  2021-02-12

6.  miR-19b-3p is associated with a diametric response to resistance exercise in older adults and regulates skeletal muscle anabolism via PTEN inhibition.

Authors:  Donato A Rivas; Fei Peng; Townsend Benard; Adelino Sanchez Ramos da Silva; Roger A Fielding; Lee M Margolis
Journal:  Am J Physiol Cell Physiol       Date:  2021-10-27       Impact factor: 4.249

7.  Different phases of aging in mouse old skeletal muscle.

Authors:  Yong-Kook Kang; Byungkuk Min; Jaemin Eom; Jung Sun Park
Journal:  Aging (Albany NY)       Date:  2022-01-11       Impact factor: 5.682

8.  Skeletal muscle transcriptomics identifies common pathways in nerve crush injury and ageing.

Authors:  C A Staunton; E D Owen; K Hemmings; A Vasilaki; A McArdle; R Barrett-Jolley; M J Jackson
Journal:  Skelet Muscle       Date:  2022-01-29       Impact factor: 4.912

Review 9.  Mitochondrial Quality Control in Sarcopenia: Updated Overview of Mechanisms and Interventions.

Authors:  Di Liu; Yi-Bin Fan; Xiao-Hua Tao; Wei-Li Pan; Yu-Xiang Wu; Xiu-Hua Wang; Yu-Qiong He; Wen-Feng Xiao; Yu-Sheng Li
Journal:  Aging Dis       Date:  2021-12-01       Impact factor: 6.745

10.  Distinct and additive effects of calorie restriction and rapamycin in aging skeletal muscle.

Authors:  Daniel J Ham; Anastasiya Börsch; Mihaela Zavolan; Nitish Mittal; Markus A Rüegg; Kathrin Chojnowska; Shuo Lin; Aurel B Leuchtmann; Alexander S Ham; Marco Thürkauf; Julien Delezie; Regula Furrer; Dominik Burri; Michael Sinnreich; Christoph Handschin; Lionel A Tintignac
Journal:  Nat Commun       Date:  2022-04-19       Impact factor: 17.694

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