Literature DB >> 33580175

Immunoreactive peptide maps of SARS-CoV-2.

Nischay Mishra1, Xi Huang2,3, Shreyas Joshi4, Cheng Guo4, James Ng4, Riddhi Thakkar4, Yongjian Wu2,3, Xin Dong2,3, Qianlin Li2,5, Richard S Pinapati6, Eric Sullivan6, Adrian Caciula4, Rafal Tokarz4, Thomas Briese4, Jiahai Lu7,8, W Ian Lipkin9.   

Abstract

Serodiagnosis of SARS-CoV-2 infection is impeded by immunological cross-reactivity among the human coronaviruses (HCoVs): SARS-CoV-2, SARS-CoV-1, MERS-CoV, OC43, 229E, HKU1, and NL63. Here we report the identification of humoral immune responses to SARS-CoV-2 peptides that may enable discrimination between exposure to SARS-CoV-2 and other HCoVs. We used a high-density peptide microarray and plasma samples collected at two time points from 50 subjects with SARS-CoV-2 infection confirmed by qPCR, samples collected in 2004-2005 from 11 subjects with IgG antibodies to SARS-CoV-1, 11 subjects with IgG antibodies to other seasonal human coronaviruses (HCoV), and 10 healthy human subjects. Through statistical modeling with linear regression and multidimensional scaling we identified specific peptides that were reassembled to identify 29 linear SARS-CoV-2 epitopes that were immunoreactive with plasma from individuals who had asymptomatic, mild or severe SARS-CoV-2 infections. Larger studies will be required to determine whether these peptides may be useful in serodiagnostics.

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Year:  2021        PMID: 33580175      PMCID: PMC7881038          DOI: 10.1038/s42003-021-01743-9

Source DB:  PubMed          Journal:  Commun Biol        ISSN: 2399-3642


  16 in total

1.  ROBUST HYPERPARAMETER ESTIMATION PROTECTS AGAINST HYPERVARIABLE GENES AND IMPROVES POWER TO DETECT DIFFERENTIAL EXPRESSION.

Authors:  Belinda Phipson; Stanley Lee; Ian J Majewski; Warren S Alexander; Gordon K Smyth
Journal:  Ann Appl Stat       Date:  2016-07-22       Impact factor: 2.083

2.  Identification of immunoreactive linear epitopes of Borrelia miyamotoi.

Authors:  Rafal Tokarz; Teresa Tagliafierro; Adrian Caciula; Nischay Mishra; Riddhi Thakkar; Lokendra V Chauhan; Stephen Sameroff; Shannon Delaney; Gary P Wormser; Adriana Marques; W Ian Lipkin
Journal:  Ticks Tick Borne Dis       Date:  2019-10-14       Impact factor: 3.744

3.  Peptide microarray-based characterization of antibody responses to host proteins after bacille Calmette-Guérin vaccination.

Authors:  Davide Valentini; Martin Rao; Lalit Rane; Sayma Rahman; Rebecca Axelsson-Robertson; Rainer Heuchel; Matthias Löhr; Daniel Hoft; Susanna Brighenti; Alimuddin Zumla; Markus Maeurer
Journal:  Int J Infect Dis       Date:  2017-02-02       Impact factor: 3.623

4.  Prevalence of IgG antibody to SARS-associated coronavirus in animal traders--Guangdong Province, China, 2003.

Authors: 
Journal:  MMWR Morb Mortal Wkly Rep       Date:  2003-10-17       Impact factor: 17.586

5.  A pneumonia outbreak associated with a new coronavirus of probable bat origin.

Authors:  Peng Zhou; Xing-Lou Yang; Xian-Guang Wang; Ben Hu; Lei Zhang; Wei Zhang; Hao-Rui Si; Yan Zhu; Bei Li; Chao-Lin Huang; Hui-Dong Chen; Jing Chen; Yun Luo; Hua Guo; Ren-Di Jiang; Mei-Qin Liu; Ying Chen; Xu-Rui Shen; Xi Wang; Xiao-Shuang Zheng; Kai Zhao; Quan-Jiao Chen; Fei Deng; Lin-Lin Liu; Bing Yan; Fa-Xian Zhan; Yan-Yi Wang; Geng-Fu Xiao; Zheng-Li Shi
Journal:  Nature       Date:  2020-02-03       Impact factor: 69.504

Review 6.  SARS-CoV-2 antibody testing-questions to be asked.

Authors:  Mustafa K Özçürümez; Andreas Ambrosch; Oliver Frey; Verena Haselmann; Stefan Holdenrieder; Michael Kiehntopf; Michael Neumaier; Michael Walter; Folker Wenzel; Roman Wölfel; Harald Renz
Journal:  J Allergy Clin Immunol       Date:  2020-05-29       Impact factor: 10.793

Review 7.  Management and Treatment of COVID-19: The Chinese Experience.

Authors:  Fujun Peng; Lei Tu; Yongshi Yang; Peng Hu; Runsheng Wang; Qinyong Hu; Feng Cao; Taijiao Jiang; Jinlyu Sun; Guogang Xu; Christopher Chang
Journal:  Can J Cardiol       Date:  2020-04-17       Impact factor: 5.223

8.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

9.  High-resolution mapping of linear antibody epitopes using ultrahigh-density peptide microarrays.

Authors:  Søren Buus; Johan Rockberg; Björn Forsström; Peter Nilsson; Mathias Uhlen; Claus Schafer-Nielsen
Journal:  Mol Cell Proteomics       Date:  2012-09-13       Impact factor: 5.911

10.  A multiplex serologic platform for diagnosis of tick-borne diseases.

Authors:  Rafal Tokarz; Nischay Mishra; Teresa Tagliafierro; Stephen Sameroff; Adrian Caciula; Lokendrasingh Chauhan; Jigar Patel; Eric Sullivan; Azad Gucwa; Brian Fallon; Marc Golightly; Claudia Molins; Martin Schriefer; Adriana Marques; Thomas Briese; W Ian Lipkin
Journal:  Sci Rep       Date:  2018-02-16       Impact factor: 4.379

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  15 in total

1.  Plasmonically Enhanced Ultrasensitive Epitope-Specific Serologic Assay for COVID-19.

Authors:  Zheyu Wang; Jeremiah J Morrissey; Lin Liu; Yixuan Wang; Qingjun Zhou; Rajesh R Naik; Srikanth Singamaneni
Journal:  Anal Chem       Date:  2021-12-22       Impact factor: 6.986

Review 2.  Applications of Peptide Microarrays in Autoantibody, Infection, and Cancer Detection.

Authors:  Carsten Grötzinger
Journal:  Methods Mol Biol       Date:  2023

3.  IgG targeting distinct seasonal coronavirus- conserved SARS-CoV-2 spike subdomains correlates with differential COVID-19 disease outcomes.

Authors:  Jose L Garrido; Matías A Medina; Felipe Bravo; Sarah McGee; Francisco Fuentes-Villalobos; Mario Calvo; Yazmin Pinos; James W Bowman; Christopher D Bahl; Maria Ines Barria; Rebecca A Brachman; Raymond A Alvarez
Journal:  Cell Rep       Date:  2022-05-16       Impact factor: 9.995

Review 4.  An overview of methods for the structural and functional mapping of epitopes recognized by anti-SARS-CoV-2 antibodies.

Authors:  Irene M Francino-Urdaniz; Timothy A Whitehead
Journal:  RSC Chem Biol       Date:  2021-09-29

5.  Comirnaty-Elicited and Convalescent Sera Recognize Different Spike Epitopes.

Authors:  Sascha Hein; Nuka Ivalu Benz; Jonathan Eisert; Marie-Luise Herrlein; Doris Oberle; Michael Dreher; Julia C Stingl; Christoph Hildt; Eberhard Hildt
Journal:  Vaccines (Basel)       Date:  2021-12-01

Review 6.  Passive Immunity Should and Will Work for COVID-19 for Some Patients.

Authors:  Nevio Cimolai
Journal:  Clin Hematol Int       Date:  2021-04-16

7.  Escherichia coli recombinant expression of SARS-CoV-2 protein fragments.

Authors:  Bailey E McGuire; Julia E Mela; Vanessa C Thompson; Logan R Cucksey; Claire E Stevens; Ralph L McWhinnie; Dirk F H Winkler; Steven Pelech; Francis E Nano
Journal:  Microb Cell Fact       Date:  2022-02-05       Impact factor: 5.328

8.  Evaluation of Spike Protein Epitopes by Assessing the Dynamics of Humoral Immune Responses in Moderate COVID-19.

Authors:  Lingyun Chen; Pengfei Pang; Huan Qi; Keqiang Yan; Yan Ren; Mingliang Ma; Ruyin Cao; Hua Li; Chuansheng Hu; Yang Li; Jun Xia; Danyun Lai; Yuliang Dong; Hewei Jiang; Hainan Zhang; Hong Shan; Shengce Tao; Siqi Liu
Journal:  Front Immunol       Date:  2022-03-18       Impact factor: 7.561

9.  Immunodominant Linear B-Cell Epitopes of SARS-CoV-2 Spike, Identified by Sera from K18-hACE2 Mice Infected with the WT or Variant Viruses.

Authors:  Yinon Levy; Ron Alcalay; Anat Zvi; Efi Makdasi; Eldar Peretz; Tal Noy-Porat; Theodor Chitlaru; Michal Mandelboim; Ohad Mazor; Ronit Rosenfeld
Journal:  Vaccines (Basel)       Date:  2022-02-07

10.  Application of SARS-CoV-2 Serology to Address Public Health Priorities.

Authors:  Amy C Sherman; Teresa Smith; Yerun Zhu; Kaitlin Taibl; Jessica Howard-Anderson; Taylor Landay; Nora Pisanic; Jennifer Kleinhenz; Trevor W Simon; Daniel Espinoza; Neena Edupuganti; Skyler Hammond; Nadine Rouphael; Huifeng Shen; Jessica K Fairley; Srilatha Edupuganti; Jaime A Cardona-Ospina; Alfonso J Rodriguez-Morales; Lakshmanane Premkumar; Jens Wrammert; Rick Tarleton; Scott Fridkin; Christopher D Heaney; Erin M Scherer; Matthew H Collins
Journal:  Front Public Health       Date:  2021-11-23
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