Literature DB >> 33579952

C. elegans germ granules require both assembly and localized regulators for mRNA repression.

Scott Takeo Aoki1,2, Tina R Lynch3, Sarah L Crittenden3,4, Craig A Bingman3, Marvin Wickens3, Judith Kimble5,6.   

Abstract

Cytoplasmic RNA-protein (RNP) granules have diverse biophysical properties, from liquid to solid, and play enigmatic roles in RNA metabolism. Nematode P granules are paradigmatic liquid droplet granules and central to germ cell development. Here we analyze a key P granule scaffolding protein, PGL-1, to investigate the functional relationship between P granule assembly and function. Using a protein-RNA tethering assay, we find that reporter mRNA expression is repressed when recruited to PGL-1. We determine the crystal structure of the PGL-1 N-terminal region to 1.5 Å, discover its dimerization, and identify key residues at the dimer interface. Mutations of those interface residues prevent P granule assembly in vivo, de-repress PGL-1 tethered mRNA, and reduce fertility. Therefore, PGL-1 dimerization lies at the heart of both P granule assembly and function. Finally, we identify the P granule-associated Argonaute WAGO-1 as crucial for repression of PGL-1 tethered mRNA. We conclude that P granule function requires both assembly and localized regulators.

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Year:  2021        PMID: 33579952      PMCID: PMC7881195          DOI: 10.1038/s41467-021-21278-1

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  77 in total

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Authors:  P Stothard
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Journal:  Cell       Date:  2006-11-17       Impact factor: 41.582

3.  Analysis of the C. elegans Germline Stem Cell Pool.

Authors:  Sarah L Crittenden; Hannah S Seidel; Judith Kimble
Journal:  Methods Mol Biol       Date:  2017

Review 4.  Biology and Mechanisms of Short RNAs in Caenorhabditis elegans.

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Journal:  Adv Genet       Date:  2013       Impact factor: 1.944

5.  Regulated Formation of an Amyloid-like Translational Repressor Governs Gametogenesis.

Authors:  Luke E Berchowitz; Greg Kabachinski; Margaret R Walker; Thomas M Carlile; Wendy V Gilbert; Thomas U Schwartz; Angelika Amon
Journal:  Cell       Date:  2015-09-24       Impact factor: 41.582

6.  piRNAs initiate an epigenetic memory of nonself RNA in the C. elegans germline.

Authors:  Masaki Shirayama; Meetu Seth; Heng-Chi Lee; Weifeng Gu; Takao Ishidate; Darryl Conte; Craig C Mello
Journal:  Cell       Date:  2012-06-25       Impact factor: 41.582

7.  An isoform of eIF4E is a component of germ granules and is required for spermatogenesis in C. elegans.

Authors:  A Amiri; B D Keiper; I Kawasaki; Y Fan; Y Kohara; R E Rhoads; S Strome
Journal:  Development       Date:  2001-10       Impact factor: 6.868

8.  C. elegans GLP-1/Notch activates transcription in a probability gradient across the germline stem cell pool.

Authors:  ChangHwan Lee; Erika B Sorensen; Tina R Lynch; Judith Kimble
Journal:  Elife       Date:  2016-10-05       Impact factor: 8.140

9.  Autophagy of germ-granule components, PGL-1 and PGL-3, contributes to DNA damage-induced germ cell apoptosis in C. elegans.

Authors:  Hyemin Min; Yong-Uk Lee; Yhong-Hee Shim; Ichiro Kawasaki
Journal:  PLoS Genet       Date:  2019-05-24       Impact factor: 5.917

10.  mRNA localization is linked to translation regulation in the Caenorhabditis elegans germ lineage.

Authors:  Dylan M Parker; Lindsay P Winkenbach; Sam Boyson; Matthew N Saxton; Camryn Daidone; Zainab A Al-Mazaydeh; Marc T Nishimura; Florian Mueller; Erin Osborne Nishimura
Journal:  Development       Date:  2020-07-08       Impact factor: 6.862

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4.  An improved in vivo tethering assay with single molecule FISH reveals that a nematode Nanos enhances reporter expression and mRNA stability.

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Review 5.  Pathological phase transitions in ALS-FTD impair dynamic RNA-protein granules.

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Review 6.  Nuage condensates: accelerators or circuit breakers for sRNA silencing pathways?

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Review 7.  The Dynamic Regulation of mRNA Translation and Ribosome Biogenesis During Germ Cell Development and Reproductive Aging.

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8.  GLH/VASA helicases promote germ granule formation to ensure the fidelity of piRNA-mediated transcriptome surveillance.

Authors:  Wenjun Chen; Jordan S Brown; Tao He; Wei-Sheng Wu; Shikui Tu; Zhiping Weng; Donglei Zhang; Heng-Chi Lee
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10.  DLC-1 facilitates germ granule assembly in Caenorhabditis elegans embryo.

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  10 in total

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