Literature DB >> 17110334

Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi.

Erbay Yigit1, Pedro J Batista, Yanxia Bei, Ka Ming Pang, Chun-Chieh G Chen, Niraj H Tolia, Leemor Joshua-Tor, Shohei Mitani, Martin J Simard, Craig C Mello.   

Abstract

Argonaute (AGO) proteins interact with small RNAs to mediate gene silencing. C. elegans contains 27 AGO genes, raising the question of what roles these genes play in RNAi and related gene-silencing pathways. Here we describe 31 deletion alleles representing all of the previously uncharacterized AGO genes. Analysis of single- and multiple-AGO mutant strains reveals functions in several pathways, including (1) chromosome segregation, (2) fertility, and (3) at least two separate steps in the RNAi pathway. We show that RDE-1 interacts with trigger-derived sense and antisense RNAs to initiate RNAi, while several other AGO proteins interact with amplified siRNAs to mediate downstream silencing. Overexpression of downstream AGOs enhances silencing, suggesting that these proteins are limiting for RNAi. Interestingly, these AGO proteins lack key residues required for mRNA cleavage. Our findings support a two-step model for RNAi, in which functionally and structurally distinct AGOs act sequentially to direct gene silencing.

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Year:  2006        PMID: 17110334     DOI: 10.1016/j.cell.2006.09.033

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  300 in total

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Authors:  Leemor Joshua-Tor; Gregory J Hannon
Journal:  Cold Spring Harb Perspect Biol       Date:  2011-10-01       Impact factor: 10.005

Review 2.  RNA-based antiviral immunity.

Authors:  Shou-Wei Ding
Journal:  Nat Rev Immunol       Date:  2010-08-13       Impact factor: 53.106

3.  Distinct phases of siRNA synthesis in an endogenous RNAi pathway in C. elegans soma.

Authors:  Jonathan I Gent; Ayelet T Lamm; Derek M Pavelec; Jay M Maniar; Poornima Parameswaran; Li Tao; Scott Kennedy; Andrew Z Fire
Journal:  Mol Cell       Date:  2010-01-28       Impact factor: 17.970

4.  The DEAD box helicase RDE-12 promotes amplification of RNAi in cytoplasmic foci in C. elegans.

Authors:  Huan Yang; Jim Vallandingham; Philip Shiu; Hua Li; Craig P Hunter; Ho Yi Mak
Journal:  Curr Biol       Date:  2014-03-27       Impact factor: 10.834

5.  Endogenous nuclear RNAi mediates behavioral adaptation to odor.

Authors:  Bi-Tzen Juang; Chen Gu; Linda Starnes; Francesca Palladino; Andrei Goga; Scott Kennedy; Noelle D L'Etoile
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

Review 6.  Origins and Mechanisms of miRNAs and siRNAs.

Authors:  Richard W Carthew; Erik J Sontheimer
Journal:  Cell       Date:  2009-02-20       Impact factor: 41.582

7.  RNAi pathways contribute to developmental history-dependent phenotypic plasticity in C. elegans.

Authors:  Sarah E Hall; Gung-Wei Chirn; Nelson C Lau; Piali Sengupta
Journal:  RNA       Date:  2013-01-17       Impact factor: 4.942

8.  RNA interference and retinoblastoma-related genes are required for repression of endogenous siRNA targets in Caenorhabditis elegans.

Authors:  Alla Grishok; Sebastian Hoersch; Phillip A Sharp
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-10       Impact factor: 11.205

9.  Homologous RIG-I-like helicase proteins direct RNAi-mediated antiviral immunity in C. elegans by distinct mechanisms.

Authors:  Xunyang Guo; Rui Zhang; Jeffrey Wang; Shou-Wei Ding; Rui Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

10.  Neuronal migration is regulated by endogenous RNAi and chromatin-binding factor ZFP-1/AF10 in Caenorhabditis elegans.

Authors:  Lisa M Kennedy; Alla Grishok
Journal:  Genetics       Date:  2014-02-20       Impact factor: 4.562

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