Literature DB >> 33579696

The 2.4 Å cryo-EM structure of a heptameric light-harvesting 2 complex reveals two carotenoid energy transfer pathways.

Alastair T Gardiner1, Katerina Naydenova2, Pablo Castro-Hartmann3, Tu C Nguyen-Phan1, Christopher J Russo2, Kasim Sader3, C Neil Hunter4, Richard J Cogdell1, Pu Qian5,4.   

Abstract

We report the 2.4 Ångström resolution structure of the light-harvesting 2 (LH2) complex from Marichromatium (Mch.) purpuratum determined by cryogenic electron microscopy. The structure contains a heptameric ring that is unique among all known LH2 structures, explaining the unusual spectroscopic properties of this bacterial antenna complex. We identify two sets of distinct carotenoids in the structure and describe a network of energy transfer pathways from the carotenoids to bacteriochlorophyll a molecules. The geometry imposed by the heptameric ring controls the resonant coupling of the long-wavelength energy absorption band. Together, these details reveal key aspects of the assembly and oligomeric form of purple bacterial LH2 complexes that were previously inaccessible by any technique.
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY).

Entities:  

Year:  2021        PMID: 33579696      PMCID: PMC7880592          DOI: 10.1126/sciadv.abe4650

Source DB:  PubMed          Journal:  Sci Adv        ISSN: 2375-2548            Impact factor:   14.136


  32 in total

1.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

2.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

3.  Adaptation of Rhodopseudomonas acidophila strain 7050 to growth at different light intensities: what are the benefits to changing the type of LH2?

Authors:  A T Gardiner; D M Niedzwiedzki; R J Cogdell
Journal:  Faraday Discuss       Date:  2018-01-22       Impact factor: 4.008

4.  Industrial cryo-EM facility setup and management.

Authors:  Kasim Sader; Rishi Matadeen; Pablo Castro Hartmann; Tor Halsan; Chris Schlichten
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-04-06       Impact factor: 7.652

5.  The origin of the unusual Qy red shift in LH1-RC complexes from purple bacteria Thermochromatium tepidum as revealed by Stark absorption spectroscopy.

Authors:  Fei Ma; Long-Jiang Yu; Zheng-Yu Wang-Otomo; Rienk van Grondelle
Journal:  Biochim Biophys Acta       Date:  2015-09-02

6.  The crystal structure of the light-harvesting complex II (B800-850) from Rhodospirillum molischianum.

Authors:  J Koepke; X Hu; C Muenke; K Schulten; H Michel
Journal:  Structure       Date:  1996-05-15       Impact factor: 5.006

7.  New tools for automated high-resolution cryo-EM structure determination in RELION-3.

Authors:  Jasenko Zivanov; Takanori Nakane; Björn O Forsberg; Dari Kimanius; Wim Jh Hagen; Erik Lindahl; Sjors Hw Scheres
Journal:  Elife       Date:  2018-11-09       Impact factor: 8.140

8.  A Bayesian approach to beam-induced motion correction in cryo-EM single-particle analysis.

Authors:  Jasenko Zivanov; Takanori Nakane; Sjors H W Scheres
Journal:  IUCrJ       Date:  2019-01-01       Impact factor: 4.769

9.  Electron counting and beam-induced motion correction enable near-atomic-resolution single-particle cryo-EM.

Authors:  Xueming Li; Paul Mooney; Shawn Zheng; Christopher R Booth; Michael B Braunfeld; Sander Gubbens; David A Agard; Yifan Cheng
Journal:  Nat Methods       Date:  2013-05-05       Impact factor: 28.547

10.  Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix.

Authors:  Dorothee Liebschner; Pavel V Afonine; Matthew L Baker; Gábor Bunkóczi; Vincent B Chen; Tristan I Croll; Bradley Hintze; Li Wei Hung; Swati Jain; Airlie J McCoy; Nigel W Moriarty; Robert D Oeffner; Billy K Poon; Michael G Prisant; Randy J Read; Jane S Richardson; David C Richardson; Massimo D Sammito; Oleg V Sobolev; Duncan H Stockwell; Thomas C Terwilliger; Alexandre G Urzhumtsev; Lizbeth L Videau; Christopher J Williams; Paul D Adams
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-10-02       Impact factor: 7.652

View more
  6 in total

Review 1.  Membranes under the Magnetic Lens: A Dive into the Diverse World of Membrane Protein Structures Using Cryo-EM.

Authors:  Sarah J Piper; Rachel M Johnson; Denise Wootten; Patrick M Sexton
Journal:  Chem Rev       Date:  2022-07-18       Impact factor: 72.087

2.  Carotenoid responds to excess energy dissipation in the LH2 complex from Rhodoblastus acidophilus.

Authors:  Ivana Šímová; Valentyna Kuznetsova; Alastair T Gardiner; Václav Šebelík; Michal Koblížek; Marcel Fuciman; Tomáš Polívka
Journal:  Photosynth Res       Date:  2022-09-06       Impact factor: 3.429

3.  Integrated wafer-scale manufacturing of electron cryomicroscopy specimen supports.

Authors:  Katerina Naydenova; Christopher J Russo
Journal:  Ultramicroscopy       Date:  2021-10-19       Impact factor: 2.689

4.  2.4-Å structure of the double-ring Gemmatimonas phototrophica photosystem.

Authors:  Pu Qian; Alastair T Gardiner; Ivana Šímová; Katerina Naydenova; Tristan I Croll; Philip J Jackson; Miroslav Kloz; Petra Čubáková; Marek Kuzma; Yonghui Zeng; Pablo Castro-Hartmann; Bart van Knippenberg; Kenneth N Goldie; David Kaftan; Pavel Hrouzek; Jan Hájek; Jon Agirre; C Alistair Siebert; David Bína; Kasim Sader; Henning Stahlberg; Roman Sobotka; Christopher J Russo; Tomáš Polívka; C Neil Hunter; Michal Koblížek
Journal:  Sci Adv       Date:  2022-02-16       Impact factor: 14.136

5.  Effects of Detergents on the Spectral Features of B820 Bacteriochlorophyll a in Light-Harvesting Complex 3.

Authors:  Yoshitaka Saga; Kohei Hamanishi
Journal:  ACS Omega       Date:  2022-08-11

6.  Cryo-EM Structure of the Rhodobacter sphaeroides Light-Harvesting 2 Complex at 2.1 Å.

Authors:  Pu Qian; David J K Swainsbury; Tristan I Croll; Pablo Castro-Hartmann; Giorgio Divitini; Kasim Sader; C Neil Hunter
Journal:  Biochemistry       Date:  2021-10-26       Impact factor: 3.162

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.