Literature DB >> 33578647

Aminoacyl-tRNA Synthetases as Valuable Targets for Antimicrobial Drug Discovery.

Luping Pang1,2, Stephen D Weeks3, Arthur Van Aerschot1.   

Abstract

Aminoacyl-tRNA synthetases (aaRSs) catalyze the esterification of tRNA with a cognate amino acid and are essential enzymes in all three kingdoms of life. Due to their important role in the translation of the genetic code, aaRSs have been recognized as suitable targets for the development of small molecule anti-infectives. In this review, following a concise discussion of aaRS catalytic and proof-reading activities, the various inhibitory mechanisms of reported natural and synthetic aaRS inhibitors are discussed. Using the expanding repository of ligand-bound X-ray crystal structures, we classified these compounds based on their binding sites, focusing on their ability to compete with the association of one, or more of the canonical aaRS substrates. In parallel, we examined the determinants of species-selectivity and discuss potential resistance mechanisms of some of the inhibitor classes. Combined, this structural perspective highlights the opportunities for further exploration of the aaRS enzyme family as antimicrobial targets.

Entities:  

Keywords:  albomycin; aminoacyl-tRNA synthetases; anti-infective targets; antibacterial; antibiotic; antifungal; antimicrobial resistance; intermediate analogs; microcin C; structure-based drug design

Mesh:

Substances:

Year:  2021        PMID: 33578647      PMCID: PMC7916415          DOI: 10.3390/ijms22041750

Source DB:  PubMed          Journal:  Int J Mol Sci        ISSN: 1422-0067            Impact factor:   5.923


  177 in total

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Journal:  J Biol Chem       Date:  1967-12-10       Impact factor: 5.157

Review 2.  Aminoacyl-tRNA synthetases: essential and still promising targets for new anti-infective agents.

Authors:  Urs A Ochsner; Xicheng Sun; Thale Jarvis; Ian Critchley; Nebojsa Janjic
Journal:  Expert Opin Investig Drugs       Date:  2007-05       Impact factor: 6.206

Review 3.  How antibiotics kill bacteria: from targets to networks.

Authors:  Michael A Kohanski; Daniel J Dwyer; James J Collins
Journal:  Nat Rev Microbiol       Date:  2010-05-04       Impact factor: 60.633

4.  Discovery of benzhydrol-oxaborole derivatives as Streptococcus pneumoniae leucyl-tRNA synthetase inhibitors.

Authors:  Guiyun Hao; Hao Li; Fei Yang; Duoling Dong; Zezhong Li; Yingying Ding; Wei Pan; Enduo Wang; Rujuan Liu; Huchen Zhou
Journal:  Bioorg Med Chem       Date:  2020-11-13       Impact factor: 3.641

5.  Widespread use of the glu-tRNAGln transamidation pathway among bacteria. A member of the alpha purple bacteria lacks glutaminyl-trna synthetase.

Authors:  Y Gagnon; L Lacoste; N Champagne; J Lapointe
Journal:  J Biol Chem       Date:  1996-06-21       Impact factor: 5.157

Review 6.  Microcin C: biosynthesis and mechanisms of bacterial resistance.

Authors:  Konstantin Severinov; Satish K Nair
Journal:  Future Microbiol       Date:  2012-02       Impact factor: 3.165

7.  Editing mechanisms in protein synthesis. Rejection of valine by the isoleucyl-tRNA synthetase.

Authors:  A R Fersht
Journal:  Biochemistry       Date:  1977-03-08       Impact factor: 3.162

8.  Agrocinopine A, a tumor-inducing plasmid-coded enzyme product, is a phosphodiester of sucrose and L-arabinose.

Authors:  M H Ryder; M E Tate; G P Jones
Journal:  J Biol Chem       Date:  1984-08-10       Impact factor: 5.157

9.  Lysyl-tRNA synthetase as a drug target in malaria and cryptosporidiosis.

Authors:  Beatriz Baragaña; Barbara Forte; Ryan Choi; Stephen Nakazawa Hewitt; Juan A Bueren-Calabuig; João Pedro Pisco; Caroline Peet; David M Dranow; David A Robinson; Chimed Jansen; Neil R Norcross; Sumiti Vinayak; Mark Anderson; Carrie F Brooks; Caitlin A Cooper; Sebastian Damerow; Michael Delves; Karen Dowers; James Duffy; Thomas E Edwards; Irene Hallyburton; Benjamin G Horst; Matthew A Hulverson; Liam Ferguson; María Belén Jiménez-Díaz; Rajiv S Jumani; Donald D Lorimer; Melissa S Love; Steven Maher; Holly Matthews; Case W McNamara; Peter Miller; Sandra O'Neill; Kayode K Ojo; Maria Osuna-Cabello; Erika Pinto; John Post; Jennifer Riley; Matthias Rottmann; Laura M Sanz; Paul Scullion; Arvind Sharma; Sharon M Shepherd; Yoko Shishikura; Frederick R C Simeons; Erin E Stebbins; Laste Stojanovski; Ursula Straschil; Fabio K Tamaki; Jevgenia Tamjar; Leah S Torrie; Amélie Vantaux; Benoît Witkowski; Sergio Wittlin; Manickam Yogavel; Fabio Zuccotto; Iñigo Angulo-Barturen; Robert Sinden; Jake Baum; Francisco-Javier Gamo; Pascal Mäser; Dennis E Kyle; Elizabeth A Winzeler; Peter J Myler; Paul G Wyatt; David Floyd; David Matthews; Amit Sharma; Boris Striepen; Christopher D Huston; David W Gray; Alan H Fairlamb; Andrei V Pisliakov; Chris Walpole; Kevin D Read; Wesley C Van Voorhis; Ian H Gilbert
Journal:  Proc Natl Acad Sci U S A       Date:  2019-03-20       Impact factor: 11.205

10.  Structural characterization of free-state and product-state Mycobacterium tuberculosis methionyl-tRNA synthetase reveals an induced-fit ligand-recognition mechanism.

Authors:  Wei Wang; Bo Qin; Justyna Aleksandra Wojdyla; Meitian Wang; Xiaopan Gao; Sheng Cui
Journal:  IUCrJ       Date:  2018-06-22       Impact factor: 4.769

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  4 in total

1.  Fragment screening and structural analyses highlight the ATP-assisted ligand binding for inhibitor discovery against type 1 methionyl-tRNA synthetase.

Authors:  Jia Yi; Zhengjun Cai; Haipeng Qiu; Feihu Lu; Zhiteng Luo; Bingyi Chen; Qiong Gu; Jun Xu; Huihao Zhou
Journal:  Nucleic Acids Res       Date:  2022-04-26       Impact factor: 19.160

Review 2.  Biosynthesis and Chemical Synthesis of Albomycin Nucleoside Antibiotics.

Authors:  Meiyan Wang; Yuxin Zhang; Lanxin Lv; Dekun Kong; Guoqing Niu
Journal:  Antibiotics (Basel)       Date:  2022-03-24

3.  Genome-Wide Association Study of Nucleotide Variants Associated with Resistance to Nine Antimicrobials in Mycoplasma bovis.

Authors:  Matthew Waldner; Andrea Kinnear; Elhem Yacoub; Tim McAllister; Karen Register; Changxi Li; Murray Jelinski
Journal:  Microorganisms       Date:  2022-07-06

4.  Double drugging of prolyl-tRNA synthetase provides a new paradigm for anti-infective drug development.

Authors:  Yogavel Manickam; Nipun Malhotra; Siddhartha Mishra; Palak Babbar; Abhishek Dusane; Benoît Laleu; Valeria Bellini; Mohamed-Ali Hakimi; Alexandre Bougdour; Amit Sharma
Journal:  PLoS Pathog       Date:  2022-03-25       Impact factor: 6.823

  4 in total

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