Literature DB >> 33577568

Unsupervised manifold learning of collective behavior.

Mathew Titus1,2, George Hagstrom3, James R Watson1.   

Abstract

Collective behavior is an emergent property of numerous complex systems, from financial markets to cancer cells to predator-prey ecological systems. Characterizing modes of collective behavior is often done through human observation, training generative models, or other supervised learning techniques. Each of these cases requires knowledge of and a method for characterizing the macro-state(s) of the system. This presents a challenge for studying novel systems where there may be little prior knowledge. Here, we present a new unsupervised method of detecting emergent behavior in complex systems, and discerning between distinct collective behaviors. We require only metrics, d(1), d(2), defined on the set of agents, X, which measure agents' nearness in variables of interest. We apply the method of diffusion maps to the systems (X, d(i)) to recover efficient embeddings of their interaction networks. Comparing these geometries, we formulate a measure of similarity between two networks, called the map alignment statistic (MAS). A large MAS is evidence that the two networks are codetermined in some fashion, indicating an emergent relationship between the metrics d(1) and d(2). Additionally, the form of the macro-scale organization is encoded in the covariances among the two sets of diffusion map components. Using these covariances we discern between different modes of collective behavior in a data-driven, unsupervised manner. This method is demonstrated on a synthetic flocking model as well as empirical fish schooling data. We show that our state classification subdivides the known behaviors of the school in a meaningful manner, leading to a finer description of the system's behavior.

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Year:  2021        PMID: 33577568      PMCID: PMC7906460          DOI: 10.1371/journal.pcbi.1007811

Source DB:  PubMed          Journal:  PLoS Comput Biol        ISSN: 1553-734X            Impact factor:   4.475


  14 in total

Review 1.  Pattern-oriented modeling of agent-based complex systems: lessons from ecology.

Authors:  Volker Grimm; Eloy Revilla; Uta Berger; Florian Jeltsch; Wolf M Mooij; Steven F Railsback; Hans-Hermann Thulke; Jacob Weiner; Thorsten Wiegand; Donald L DeAngelis
Journal:  Science       Date:  2005-11-11       Impact factor: 47.728

2.  Collective memory and spatial sorting in animal groups.

Authors:  Iain D Couzin; Jens Krause; Richard James; Graeme D Ruxton; Nigel R Franks
Journal:  J Theor Biol       Date:  2002-09-07       Impact factor: 2.691

Review 3.  Complexity of coupled human and natural systems.

Authors:  Jianguo Liu; Thomas Dietz; Stephen R Carpenter; Marina Alberti; Carl Folke; Emilio Moran; Alice N Pell; Peter Deadman; Timothy Kratz; Jane Lubchenco; Elinor Ostrom; Zhiyun Ouyang; William Provencher; Charles L Redman; Stephen H Schneider; William W Taylor
Journal:  Science       Date:  2007-09-14       Impact factor: 47.728

4.  Complex systems: ecology for bankers.

Authors:  Robert M May; Simon A Levin; George Sugihara
Journal:  Nature       Date:  2008-02-21       Impact factor: 49.962

Review 5.  Classifying collective cancer cell invasion.

Authors:  Peter Friedl; Joseph Locker; Erik Sahai; Jeffrey E Segall
Journal:  Nat Cell Biol       Date:  2012-08       Impact factor: 28.824

6.  Unsupervised learning of phase transitions: From principal component analysis to variational autoencoders.

Authors:  Sebastian J Wetzel
Journal:  Phys Rev E       Date:  2017-08-18       Impact factor: 2.529

7.  Inferring the structure and dynamics of interactions in schooling fish.

Authors:  Yael Katz; Kolbjørn Tunstrøm; Christos C Ioannou; Cristián Huepe; Iain D Couzin
Journal:  Proc Natl Acad Sci U S A       Date:  2011-07-27       Impact factor: 11.205

8.  Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.

Authors:  R R Coifman; S Lafon; A B Lee; M Maggioni; B Nadler; F Warner; S W Zucker
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-17       Impact factor: 12.779

9.  Collective states, multistability and transitional behavior in schooling fish.

Authors:  Kolbjørn Tunstrøm; Yael Katz; Christos C Ioannou; Cristián Huepe; Matthew J Lutz; Iain D Couzin
Journal:  PLoS Comput Biol       Date:  2013-02-28       Impact factor: 4.475

10.  Collective behaviour without collective order in wild swarms of midges.

Authors:  Alessandro Attanasi; Andrea Cavagna; Lorenzo Del Castello; Irene Giardina; Stefania Melillo; Leonardo Parisi; Oliver Pohl; Bruno Rossaro; Edward Shen; Edmondo Silvestri; Massimiliano Viale
Journal:  PLoS Comput Biol       Date:  2014-07-24       Impact factor: 4.475

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