Literature DB >> 33576627

Unique Molecular Interaction with the Histone Deacetylase 6 Catalytic Tunnel: Crystallographic and Biological Characterization of a Model Chemotype.

Olasunkanmi O Olaoye1,2, Paris R Watson3, Nabanita Nawar1,2, Mulu Geletu1, Abootaleb Sedighi1, Shazreh Bukhari1,2, Yasir S Raouf1,2, Pimyupa Manaswiyoungkul1,2, Fettah Erdogan1,2, Ayah Abdeldayem1,2, Aaron D Cabral1,2, Muhammad Murtaza Hassan1,2, Krimo Toutah1, Andrew E Shouksmith1, Justyna M Gawel1, Johan Israelian1,2, Tudor B Radu1,2, Niyati Kachhiyapatel1, Elvin D de Araujo1, David W Christianson3, Patrick T Gunning1,2.   

Abstract

Histone deacetylase 6 (HDAC6) is involved in multiple regulatory processes, ranging from cellular stress to intracellular transport. Inhibition of aberrant HDAC6 activity in several cancers and neurological diseases has been shown to be efficacious in both preclinical and clinical studies. While selective HDAC6 targeting has been pursued as an alternative to pan-HDAC drugs, identifying truly selective molecular templates has not been trivial. Herein, we report a structure-activity relationship study yielding TO-317, which potently binds HDAC6 catalytic domain 2 (Ki = 0.7 nM) and inhibits the enzyme function (IC50 = 2 nM). TO-317 exhibits 158-fold selectivity for HDAC6 over other HDAC isozymes by binding the catalytic Zn2+ and, uniquely, making a never seen before direct hydrogen bond with the Zn2+ coordinating residue, His614. This novel structural motif targeting the second-sphere His614 interaction, observed in a 1.84 Å resolution crystal structure with drHDAC6 from zebrafish, can provide new pharmacophores for identifying enthalpically driven, high-affinity, HDAC6-selective inhibitors.

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Year:  2021        PMID: 33576627      PMCID: PMC8063965          DOI: 10.1021/acs.jmedchem.0c01922

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  55 in total

1.  Identification and Characterization of AES-135, a Hydroxamic Acid-Based HDAC Inhibitor That Prolongs Survival in an Orthotopic Mouse Model of Pancreatic Cancer.

Authors:  Andrew E Shouksmith; Fenil Shah; Michelle L Grimard; Justyna M Gawel; Yasir S Raouf; Mulu Geletu; Angelika Berger-Becvar; Elvin D de Araujo; H Artee Luchman; William L Heaton; David Bakhshinyan; Ashley A Adile; Chitra Venugopal; Thomas O'Hare; Michael W Deininger; Sheila K Singh; Stephen F Konieczny; Samuel Weiss; Melissa L Fishel; Patrick T Gunning
Journal:  J Med Chem       Date:  2019-03-06       Impact factor: 7.446

2.  Discovery of selective small-molecule HDAC6 inhibitor for overcoming proteasome inhibitor resistance in multiple myeloma.

Authors:  Teru Hideshima; Jun Qi; Ronald M Paranal; Weiping Tang; Edward Greenberg; Nathan West; Meaghan E Colling; Guillermina Estiu; Ralph Mazitschek; Jennifer A Perry; Hiroto Ohguchi; Francesca Cottini; Naoya Mimura; Güllü Görgün; Yu-Tzu Tai; Paul G Richardson; Ruben D Carrasco; Olaf Wiest; Stuart L Schreiber; Kenneth C Anderson; James E Bradner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-31       Impact factor: 11.205

Review 3.  Novel roles of reactive oxygen species in the pathogenesis of acute myeloid leukemia.

Authors:  Fuling Zhou; Qiang Shen; François X Claret
Journal:  J Leukoc Biol       Date:  2013-05-28       Impact factor: 4.962

4.  Molecular evolution of the histone deacetylase family: functional implications of phylogenetic analysis.

Authors:  Ivan V Gregoretti; Yun-Mi Lee; Holly V Goodson
Journal:  J Mol Biol       Date:  2004-04-16       Impact factor: 5.469

5.  Combination of a novel HDAC6 inhibitor ACY-241 and anti-PD-L1 antibody enhances anti-tumor immunity and cytotoxicity in multiple myeloma.

Authors:  A Ray; D S Das; Y Song; T Hideshima; Y-T Tai; D Chauhan; K C Anderson
Journal:  Leukemia       Date:  2017-11-06       Impact factor: 11.528

6.  Structural Basis of Catalysis and Inhibition of HDAC6 CD1, the Enigmatic Catalytic Domain of Histone Deacetylase 6.

Authors:  Jeremy D Osko; David W Christianson
Journal:  Biochemistry       Date:  2019-12-02       Impact factor: 3.162

Review 7.  HDAC6 at Crossroads of Infection and Innate Immunity.

Authors:  Olga Moreno-Gonzalo; Federico Mayor; Francisco Sánchez-Madrid
Journal:  Trends Immunol       Date:  2018-06-21       Impact factor: 16.687

Review 8.  A patent review of histone deacetylase 6 inhibitors in neurodegenerative diseases (2014-2019).

Authors:  Sida Shen; Alan P Kozikowski
Journal:  Expert Opin Ther Pat       Date:  2019-12-25       Impact factor: 6.674

9.  Precision Targeting with EZH2 and HDAC Inhibitors in Epigenetically Dysregulated Lymphomas.

Authors:  Jennifer K Lue; Sathyen A Prabhu; Yuxuan Liu; Yulissa Gonzalez; Akanksha Verma; Prabhjot S Mundi; Nebiyu Abshiru; Jeannie M Camarillo; Swasti Mehta; Emily I Chen; Changhong Qiao; Renu Nandakumar; Serge Cremers; Neil L Kelleher; Olivier Elemento; Jennifer E Amengual
Journal:  Clin Cancer Res       Date:  2019-04-12       Impact factor: 13.801

10.  Histone deacetylase inhibitor-induced cancer stem cells exhibit high pentose phosphate pathway metabolism.

Authors:  Bisrat G Debeb; Lara Lacerda; Richard Larson; Adam R Wolfe; Savitri Krishnamurthy; James M Reuben; Naoto T Ueno; Michael Gilcrease; Wendy A Woodward
Journal:  Oncotarget       Date:  2016-05-10
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  3 in total

1.  Development of HDAC Inhibitors Exhibiting Therapeutic Potential in T-Cell Prolymphocytic Leukemia.

Authors:  Krimo Toutah; Nabanita Nawar; Sanna Timonen; Helena Sorger; Yasir S Raouf; Shazreh Bukhari; Jana von Jan; Aleksandr Ianevski; Justyna M Gawel; Olasunkanmi O Olaoye; Mulu Geletu; Ayah Abdeldayem; Johan Israelian; Tudor B Radu; Abootaleb Sedighi; Muzaffar N Bhatti; Muhammad Murtaza Hassan; Pimyupa Manaswiyoungkul; Andrew E Shouksmith; Heidi A Neubauer; Elvin D de Araujo; Tero Aittokallio; Oliver H Krämer; Richard Moriggl; Satu Mustjoki; Marco Herling; Patrick T Gunning
Journal:  J Med Chem       Date:  2021-06-08       Impact factor: 7.446

Review 2.  A Therapeutic Perspective of HDAC8 in Different Diseases: An Overview of Selective Inhibitors.

Authors:  Anna Fontana; Ilaria Cursaro; Gabriele Carullo; Sandra Gemma; Stefania Butini; Giuseppe Campiani
Journal:  Int J Mol Sci       Date:  2022-09-02       Impact factor: 6.208

3.  Structure-based prediction of HDAC6 substrates validated by enzymatic assay reveals determinants of promiscuity and detects new potential substrates.

Authors:  Julia K Varga; Kelsey Diffley; Katherine R Welker Leng; Carol A Fierke; Ora Schueler-Furman
Journal:  Sci Rep       Date:  2022-02-02       Impact factor: 4.379

  3 in total

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