Literature DB >> 33572363

Deskilled and Rapid Drug-Resistant Gene Detection by Centrifugal Force-Assisted Thermal Convection PCR Device.

Wilfred Villariza Espulgar1, Masato Saito1,2, Kazuya Takahashi1, Sakiko Ushiro1, Norihisa Yamamoto3,4, Yukihiro Akeda3,4, Shigeto Hamaguchi3,4, Kazunori Tomono3, Eiichi Tamiya1,2.   

Abstract

Here we report the improved Cyclo olefin polymer (COP) microfluidic chip and polymerase chain reaction (PCR) amplification system for point-of-care testing (POCT) in rapid detection of Carbapenem-resistant Enterobacteriaceae (CRE). The PCR solution and thermal cycling is controlled by the relative gravitational acceleration (7G) only and is expected to pose minimal problem in operation by non-expert users. Detection is based on identifying the presence of carbapenemase encoding gene through the corresponding fluorescence signal after amplification. For preliminary tests, the device has been demonstrated to detect blaIMP-6 from patients stool samples. From the prepared samples, 96.4 fg/µL was detected with good certainty within 15 min (~106 thermocycles,) which is significantly faster than the conventional culture plate method. Moreover, the device is expected to detect other target genes in parallel as determination of the presence of blaNDM-1 and blaOXA-23 from control samples has also been demonstrated. With the rising threat of drug-resistant bacteria in global healthcare, this technology can greatly aid the health sector by enabling the appropriate use of antibiotics, accelerating the treatment of carriers, and suppressing the spread.

Entities:  

Keywords:  IMP-type CPE; PCR; POCT; drug-resistant gene; microfluidics

Year:  2021        PMID: 33572363      PMCID: PMC7916093          DOI: 10.3390/s21041225

Source DB:  PubMed          Journal:  Sensors (Basel)        ISSN: 1424-8220            Impact factor:   3.576


  28 in total

1.  High frequency of IMP-6 among clinical isolates of metallo-β-lactamase-producing Escherichia coli in Japan.

Authors:  Hisakazu Yano; Miho Ogawa; Shiro Endo; Risako Kakuta; Hajime Kanamori; Shinya Inomata; Noriomi Ishibashi; Tetsuji Aoyagi; Masumitsu Hatta; Yoshiaki Gu; Mitsuhiro Yamada; Koichi Tokuda; Hiroyuki Kunishima; Miho Kitagawa; Yoichi Hirakata; Mitsuo Kaku
Journal:  Antimicrob Agents Chemother       Date:  2012-06-04       Impact factor: 5.191

2.  LabDisk with complete reagent prestorage for sample-to-answer nucleic acid based detection of respiratory pathogens verified with influenza A H3N2 virus.

Authors:  F Stumpf; F Schwemmer; T Hutzenlaub; D Baumann; O Strohmeier; G Dingemanns; G Simons; C Sager; L Plobner; F von Stetten; R Zengerle; D Mark
Journal:  Lab Chip       Date:  2015-11-26       Impact factor: 6.799

3.  Parallel nanoliter microfluidic analysis system.

Authors:  Per Andersson; Gerald Jesson; Gunnar Kylberg; Gunnar Ekstrand; Gunnar Thorsén
Journal:  Anal Chem       Date:  2007-05-02       Impact factor: 6.986

4.  Outbreak of OXA-48-positive carbapenem-resistant Klebsiella pneumoniae isolates in France.

Authors:  Gaelle Cuzon; Jocelyne Ouanich; Remy Gondret; Thierry Naas; Patrice Nordmann
Journal:  Antimicrob Agents Chemother       Date:  2011-02-22       Impact factor: 5.191

5.  Analysis of a complete library of putative drug transporter genes in Escherichia coli.

Authors:  K Nishino; A Yamaguchi
Journal:  J Bacteriol       Date:  2001-10       Impact factor: 3.490

Review 6.  Strategies for identification of carbapenemase-producing Enterobacteriaceae.

Authors:  Patrice Nordmann; Laurent Poirel
Journal:  J Antimicrob Chemother       Date:  2012-10-26       Impact factor: 5.790

7.  Transferable plasmid-mediated antibiotic resistance in Acinetobacter.

Authors:  F W Goldstein; A Labigne-Roussel; G Gerbaud; C Carlier; E Collatz; P Courvalin
Journal:  Plasmid       Date:  1983-09       Impact factor: 3.466

8.  The Case for Improved Diagnostic Tools to Control Ebola Virus Disease in West Africa and How to Get There.

Authors:  Arlene C Chua; Jane Cunningham; Francis Moussy; Mark D Perkins; Pierre Formenty
Journal:  PLoS Negl Trop Dis       Date:  2015-06-11

9.  Interconnected microbiomes and resistomes in low-income human habitats.

Authors:  Erica C Pehrsson; Pablo Tsukayama; Sanket Patel; Melissa Mejía-Bautista; Giordano Sosa-Soto; Karla M Navarrete; Maritza Calderon; Lilia Cabrera; William Hoyos-Arango; M Teresita Bertoli; Douglas E Berg; Robert H Gilman; Gautam Dantas
Journal:  Nature       Date:  2016-05-12       Impact factor: 49.962

10.  Development of selective medium for IMP-type carbapenemase-producing Enterobacteriaceae in stool specimens.

Authors:  Norihisa Yamamoto; Ryuji Kawahara; Yukihiro Akeda; Rathina Kumar Shanmugakani; Hisao Yoshida; Hideharu Hagiya; Naohiro Hara; Isao Nishi; Satomi Yukawa; Rumiko Asada; Yumi Sasaki; Kazuhiro Maeda; Noriko Sakamoto; Shigeyuki Hamada; Kazunori Tomono
Journal:  BMC Infect Dis       Date:  2017-03-24       Impact factor: 3.090

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  1 in total

Review 1.  Rapid PCR Powered by Microfluidics: A Quick Review Under the Background of COVID-19 Pandemic.

Authors:  Xiaobin Dong; Luyao Liu; Yunping Tu; Jing Zhang; Guijun Miao; Lulu Zhang; Shengxiang Ge; Ningshao Xia; Duli Yu; Xianbo Qiu
Journal:  Trends Analyt Chem       Date:  2021-06-24       Impact factor: 12.296

  1 in total

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