Literature DB >> 33570958

Curvature Energetics Determined by Alchemical Simulation on Four Topologically Distinct Lipid Phases.

Andrew H Beaven1,2, Clément Arnarez3, Edward Lyman3, W F Drew Bennett4, Alexander J Sodt1.   

Abstract

The relative curvature energetics of two lipids are tested using thermodynamic integration (TI) on four topologically distinct lipid phases. Simulations use TI to switch between choline headgroup lipids (POPC; that prefers to be flat) and ethanolamine headgroup lipids (POPE; that prefer, for example, the inner monolayer of vesicles). The thermodynamical moving of the lipids between planar, inverse hexagonal (HII), cubic (QII; Pn3m space group), and vesicle topologies reveals differences in material parameters that were previously challenging to access. The methodology allows for predictions of two important lipid material properties: the difference in POPC/POPE monolayer intrinsic curvature (ΔJ0) and the difference in POPC/POPE monolayer Gaussian curvature modulus (Δκ̅m), both of which are connected to the energetics of topological variation. Analysis of the TI data indicates that, consistent with previous experiment and simulation, the J0 of POPE is more negative than POPC (ΔJ0 = -0.018 ± 0.001 Å-1). The theoretical framework extracts significant differences in κ̅m of which POPE is less negative than POPC by 2.0 to 4.0 kcal/mol. The range of these values is determined by considering subsets of the simulations, and disagreement between these subsets suggests separate mechanical parameters at very high curvature. Finally, the fit of the TI data to the model indicates that the position of the pivotal plane of curvature is not constant across topologies at high curvature. Overall, the results offer insights into lipid material properties, the limits of a single HC model, and how to test them using simulation.

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Year:  2021        PMID: 33570958      PMCID: PMC9069320          DOI: 10.1021/acs.jpcb.0c09458

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   3.466


  68 in total

1.  Membrane elasticity in giant vesicles with fluid phase coexistence.

Authors:  T Baumgart; S Das; W W Webb; J T Jenkins
Journal:  Biophys J       Date:  2005-05-13       Impact factor: 4.033

2.  PACKMOL: a package for building initial configurations for molecular dynamics simulations.

Authors:  L Martínez; R Andrade; E G Birgin; J M Martínez
Journal:  J Comput Chem       Date:  2009-10       Impact factor: 3.376

3.  Bending free energy from simulation: correspondence of planar and inverse hexagonal lipid phases.

Authors:  Alexander J Sodt; Richard W Pastor
Journal:  Biophys J       Date:  2013-05-21       Impact factor: 4.033

4.  Elastic curvature constants of lipid monolayers and bilayers.

Authors:  Derek Marsh
Journal:  Chem Phys Lipids       Date:  2006-09-06       Impact factor: 3.329

5.  Contribution of membrane elastic energy to rhodopsin function.

Authors:  Olivier Soubias; Walter E Teague; Kirk G Hines; Drake C Mitchell; Klaus Gawrisch
Journal:  Biophys J       Date:  2010-08-04       Impact factor: 4.033

6.  Gramicidin A Channel Formation Induces Local Lipid Redistribution II: A 3D Continuum Elastic Model.

Authors:  Alexander J Sodt; Andrew H Beaven; Olaf S Andersen; Wonpil Im; Richard W Pastor
Journal:  Biophys J       Date:  2017-03-28       Impact factor: 4.033

7.  Molecular dynamics simulation of the formation, structure, and dynamics of small phospholipid vesicles.

Authors:  Siewert J Marrink; Alan E Mark
Journal:  J Am Chem Soc       Date:  2003-12-10       Impact factor: 15.419

8.  CHARMM-GUI Martini Maker for Coarse-Grained Simulations with the Martini Force Field.

Authors:  Yifei Qi; Helgi I Ingólfsson; Xi Cheng; Jumin Lee; Siewert J Marrink; Wonpil Im
Journal:  J Chem Theory Comput       Date:  2015-08-27       Impact factor: 6.006

9.  Direct spectroscopic observation of inner and outer hydrocarbon chains of lipid bilayer vesicles.

Authors:  K J Longmuir; F W Dahlquist
Journal:  Proc Natl Acad Sci U S A       Date:  1976-08       Impact factor: 11.205

Review 10.  Modulation of rhodopsin function by properties of the membrane bilayer.

Authors:  M F Brown
Journal:  Chem Phys Lipids       Date:  1994-09-06       Impact factor: 3.329

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