Literature DB >> 33568724

A non-invasive method to generate induced pluripotent stem cells from primate urine.

Johanna Geuder1, Lucas E Wange1, Aleksandar Janjic1, Jessica Radmer1, Philipp Janssen1, Johannes W Bagnoli1, Stefan Müller2, Artur Kaul3, Mari Ohnuki4, Wolfgang Enard5.   

Abstract

Comparing the molecular and cellular properties among primates is crucial to better understand human evolution and biology. However, it is difficult or ethically impossible to collect matched tissues from many primates, especially during development. An alternative is to model different cell types and their development using induced pluripotent stem cells (iPSCs). These can be generated from many tissue sources, but non-invasive sampling would decisively broaden the spectrum of non-human primates that can be investigated. Here, we report the generation of primate iPSCs from urine samples. We first validate and optimize the procedure using human urine samples and show that suspension- Sendai Virus transduction of reprogramming factors into urinary cells efficiently generates integration-free iPSCs, which maintain their pluripotency under feeder-free culture conditions. We demonstrate that this method is also applicable to gorilla and orangutan urinary cells isolated from a non-sterile zoo floor. We characterize the urinary cells, iPSCs and derived neural progenitor cells using karyotyping, immunohistochemistry, differentiation assays and RNA-sequencing. We show that the urine-derived human iPSCs are indistinguishable from well characterized PBMC-derived human iPSCs and that the gorilla and orangutan iPSCs are well comparable to the human iPSCs. In summary, this study introduces a novel and efficient approach to non-invasively generate iPSCs from primate urine. This will extend the zoo of species available for a comparative approach to molecular and cellular phenotypes.

Entities:  

Year:  2021        PMID: 33568724      PMCID: PMC7876031          DOI: 10.1038/s41598-021-82883-0

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  54 in total

1.  A SINE-based dichotomous key for primate identification.

Authors:  Scott W Herke; Jinchuan Xing; David A Ray; Jacquelyn W Zimmerman; Richard Cordaux; Mark A Batzer
Journal:  Gene       Date:  2006-08-30       Impact factor: 3.688

Review 2.  Functional primate genomics--leveraging the medical potential.

Authors:  Wolfgang Enard
Journal:  J Mol Med (Berl)       Date:  2012-05-04       Impact factor: 4.599

3.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

4.  Organoid single-cell genomic atlas uncovers human-specific features of brain development.

Authors:  Sabina Kanton; Michael James Boyle; Zhisong He; Malgorzata Santel; Anne Weigert; Fátima Sanchís-Calleja; Patricia Guijarro; Leila Sidow; Jonas Simon Fleck; Dingding Han; Zhengzong Qian; Michael Heide; Wieland B Huttner; Philipp Khaitovich; Svante Pääbo; Barbara Treutlein; J Gray Camp
Journal:  Nature       Date:  2019-10-16       Impact factor: 49.962

Review 5.  Comparative genomics as a tool to understand evolution and disease.

Authors:  Jessica Alföldi; Kerstin Lindblad-Toh
Journal:  Genome Res       Date:  2013-07       Impact factor: 9.043

6.  Derivation of induced pluripotent stem cells in Japanese macaque (Macaca fuscata).

Authors:  Risako Nakai; Mari Ohnuki; Kota Kuroki; Haruka Ito; Hirohisa Hirai; Ryunosuke Kitajima; Toko Fujimoto; Masato Nakagawa; Wolfgang Enard; Masanori Imamura
Journal:  Sci Rep       Date:  2018-08-15       Impact factor: 4.379

7.  zUMIs - A fast and flexible pipeline to process RNA sequencing data with UMIs.

Authors:  Swati Parekh; Christoph Ziegenhain; Beate Vieth; Wolfgang Enard; Ines Hellmann
Journal:  Gigascience       Date:  2018-06-01       Impact factor: 6.524

8.  Generating a non-integrating human induced pluripotent stem cell bank from urine-derived cells.

Authors:  Yanting Xue; Xiujuan Cai; Linli Wang; Baojian Liao; Hui Zhang; Yongli Shan; Qianyu Chen; Tiancheng Zhou; Xirui Li; Jundi Hou; Shubin Chen; Rongping Luo; Dajiang Qin; Duanqing Pei; Guangjin Pan
Journal:  PLoS One       Date:  2013-08-05       Impact factor: 3.240

9.  Urine-derived cells provide a readily accessible cell type for feeder-free mRNA reprogramming.

Authors:  A Gaignerie; N Lefort; M Rousselle; V Forest-Choquet; L Flippe; V Francois-Campion; A Girardeau; A Caillaud; C Chariau; Q Francheteau; A Derevier; F Chaubron; S Knöbel; N Gaborit; K Si-Tayeb; L David
Journal:  Sci Rep       Date:  2018-09-25       Impact factor: 4.379

10.  Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage.

Authors:  Dvir Aran; Agnieszka P Looney; Leqian Liu; Esther Wu; Valerie Fong; Austin Hsu; Suzanna Chak; Ram P Naikawadi; Paul J Wolters; Adam R Abate; Atul J Butte; Mallar Bhattacharya
Journal:  Nat Immunol       Date:  2019-01-14       Impact factor: 25.606

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  5 in total

Review 1.  Urine-derived induced pluripotent/neural stem cells for modeling neurological diseases.

Authors:  Tianyuan Shi; Martin Cheung
Journal:  Cell Biosci       Date:  2021-05-13       Impact factor: 7.133

Review 2.  Non-human primate pluripotent stem cells for the preclinical testing of regenerative therapies.

Authors:  Ignacio Rodriguez-Polo; Rüdiger Behr
Journal:  Neural Regen Res       Date:  2022-09       Impact factor: 5.135

3.  In vitro induced pluripotency from urine-derived cells in porcine.

Authors:  Kaiana Recchia; Lucas Simões Machado; Ramon Cesar Botigelli; Naira Caroline Godoy Pieri; Gabriela Barbosa; Raquel Vasconcelos Guimarães de Castro; Mariana Groke Marques; Laís Vicari de Figueiredo Pessôa; Paulo Fantinato Neto; Flávio Vieira Meirelles; Aline Fernanda de Souza; Simone Maria Massami Kitamura Martins; Fabiana Fernandes Bressan
Journal:  World J Stem Cells       Date:  2022-03-26       Impact factor: 5.326

4.  Prime-seq, efficient and powerful bulk RNA sequencing.

Authors:  Aleksandar Janjic; Lucas E Wange; Johannes W Bagnoli; Johanna Geuder; Phong Nguyen; Daniel Richter; Beate Vieth; Binje Vick; Irmela Jeremias; Christoph Ziegenhain; Ines Hellmann; Wolfgang Enard
Journal:  Genome Biol       Date:  2022-03-31       Impact factor: 13.583

Review 5.  Plumping up a Cushion of Human Biowaste in Regenerative Medicine: Novel Insights into a State-of-the-Art Reserve Arsenal.

Authors:  Nima Najafi-Ghalehlou; Alireza Feizkhah; Mohammadreza Mobayen; Zahra Pourmohammadi-Bejarpasi; Shima Shekarchi; Amaneh Mohammadi Roushandeh; Mehryar Habibi Roudkenar
Journal:  Stem Cell Rev Rep       Date:  2022-05-03       Impact factor: 6.692

  5 in total

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