Literature DB >> 33568703

Equilibrium phase diagram and thermal responses of charged DNA-virus rod-suspensions at low ionic strengths.

Kyongok Kang1.   

Abstract

The collective behavior of DNA is important for exploring new types of bacteria in the means of detection, which is greatly interested in the understanding of interactions between DNAs in living systems. How they self-organize themselves is a physical common phenomenon for broad ranges of thermodynamic systems. In this work, the equilibrium phase diagrams of charged chiral rods (fd viruses) at low ionic strengths (below a few mM) are provided to demonstrate both replicas of (or self-organized) twist orders and replica symmetry breaking near high concentration glass-states. By varying the ionic strengths, it appears that a critical ionic strength is obtained below 1-2 mM salt, where the twist and freezing of nematic domains diverge. Also, the microscopic relaxation is revealed by the ionic strength-dependent effective Debye screening length. At a fixed low ionic strength, the local orientations of twist are shown by two different length scales of optical pitch, in the chiral-nematic N* phase and the helical domains [Formula: see text], for low and high concentration, respectively. RSB occurs in several cases of crossing phase boundary lines in the equilibrium phase diagram of DNA-rod concentration and ionic strength, including long-time kinetic arrests in the presence of twist orders. The different pathways of PATH I, II and III are due to many-body effects of randomized orientations for charged fd rods undergoing long-range electrostatic interactions in bulk elastic medium. In addition, the thermal stability are shown for chiral pitches of the N* phase and the abnormal cooling process of a specific heat in a structural glass. Here, the concentration-driven twist-effects of charged DNA rods are explored using various experimental methods involving image-time correlation, microscopic dynamics in small angle dynamic light scattering, optical activity in second harmonic generation, and differential scanning calorimetry for the glass state.

Entities:  

Year:  2021        PMID: 33568703      PMCID: PMC7876043          DOI: 10.1038/s41598-021-82653-y

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  23 in total

1.  Three-dimensional high-resolution second-harmonic generation imaging of endogenous structural proteins in biological tissues.

Authors:  Paul J Campagnola; Andrew C Millard; Mark Terasaki; Pamela E Hoppe; Christian J Malone; William A Mohler
Journal:  Biophys J       Date:  2002-01       Impact factor: 4.033

2.  Phase transition in the Ruderman-Kittel-Kasuya-Yosida model of spin-glass.

Authors: 
Journal:  Phys Rev Lett       Date:  1986-03-31       Impact factor: 9.161

3.  DNA cholesteric phases: the role of DNA molecular chirality and DNA-DNA electrostatic interactions.

Authors:  A G Cherstvy
Journal:  J Phys Chem B       Date:  2008-09-12       Impact factor: 2.991

4.  Diffusion of spheres in isotropic and nematic networks of rods: electrostatic interactions and hydrodynamic screening.

Authors:  Kyongok Kang; A Wilk; A Patkowski; Jan K G Dhont
Journal:  J Chem Phys       Date:  2007-06-07       Impact factor: 3.488

5.  Image time-correlation, dynamic light scattering, and birefringence for the study of the response of anisometric colloids to external fields.

Authors:  Kyongok Kang
Journal:  Rev Sci Instrum       Date:  2011-05       Impact factor: 1.523

6.  Correction: An electric-field induced dynamical state in dispersions of charged colloidal rods.

Authors:  Jan K G Dhont; Kyongok Kang
Journal:  Soft Matter       Date:  2015-04-14       Impact factor: 3.679

7.  An electric-field induced dynamical state in dispersions of charged colloidal rods.

Authors:  Jan K G Dhont; Kyongok Kang
Journal:  Soft Matter       Date:  2014-03-28       Impact factor: 3.679

8.  The ionic properties of the filamentous bacteriophages Pf1 and fd.

Authors:  K Zimmermann; H Hagedorn; C C Heuck; M Hinrichsen; H Ludwig
Journal:  J Biol Chem       Date:  1986-02-05       Impact factor: 5.157

9.  DNA packing in the filamentous viruses fd, Xf, Pf1 and Pf3.

Authors:  A Casadevall; L A Day
Journal:  Nucleic Acids Res       Date:  1982-04-10       Impact factor: 16.971

10.  Species detection using environmental DNA from water samples.

Authors:  Gentile Francesco Ficetola; Claude Miaud; François Pompanon; Pierre Taberlet
Journal:  Biol Lett       Date:  2008-08-23       Impact factor: 3.703

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  1 in total

1.  Direct visualization of local activities of long DNA strands via image-time correlation.

Authors:  Kyongok Kang; Yue Ma; Koichiro Sadakane
Journal:  Eur Biophys J       Date:  2021-09-09       Impact factor: 1.733

  1 in total

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