Literature DB >> 18785770

DNA cholesteric phases: the role of DNA molecular chirality and DNA-DNA electrostatic interactions.

A G Cherstvy1.   

Abstract

DNA molecules form dense liquid-crystalline twisted phases both in vivo and in vitro. How the microscopic DNA chirality is transferred into intermolecular twist in these mesophases and what is the role of chiral DNA-DNA electrostatic interactions is still not completely clear. In this paper, we first give an extended overview of experimental observations on DNA cholesteric phases and discuss the factors affecting their stability. Then, we consider the effects of steric and electrostatic interactions of grooved helical molecules on the sign of cholesteric twist. We present some theoretical results on the strength of DNA-DNA chiral electrostatic interactions, on DNA-DNA azimuthal correlations in cholesteric phases, on the value of DNA cholesteric pitch, and on the regions of existence of DNA chiral phases stabilized by electrostatic interactions. We suggest for instance that 146 bp long DNA fragments with stronger affinities for the nucleosome formation can form less chiral cholesteric phases, with a larger left-handed cholesteric pitch. Also, the value of left-handed pitch formed in assemblies of homologous DNA fragments is predicted to be smaller than that of randomly sequenced DNAs. We expect also the cholesteric assemblies of several-kbp-long DNAs to require higher external osmotic pressures for their stability than twisted phases of short nucleosomal DNA fragments at the same DNA lattice density.

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Year:  2008        PMID: 18785770     DOI: 10.1021/jp801220p

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  9 in total

1.  Torque-induced deformations of charged elastic DNA rods: thin helices, loops, and precursors of DNA supercoiling.

Authors:  Andrey G Cherstvy
Journal:  J Biol Phys       Date:  2011-01-18       Impact factor: 1.365

2.  Right-handed double-helix ultrashort DNA yields chiral nematic phases with both right- and left-handed director twist.

Authors:  Giuliano Zanchetta; Fabio Giavazzi; Michi Nakata; Marco Buscaglia; Roberto Cerbino; Noel A Clark; Tommaso Bellini
Journal:  Proc Natl Acad Sci U S A       Date:  2010-09-27       Impact factor: 11.205

3.  Structure-driven homology pairing of chromatin fibers: the role of electrostatics and protein-induced bridging.

Authors:  A G Cherstvy; V B Teif
Journal:  J Biol Phys       Date:  2013-01-17       Impact factor: 1.365

4.  DNA-DNA interactions in bacteriophage capsids are responsible for the observed DNA knotting.

Authors:  Davide Marenduzzo; Enzo Orlandini; Andrzej Stasiak; De Witt Sumners; Luca Tubiana; Cristian Micheletti
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

5.  Re-entrant cholesteric phase in DNA liquid-crystalline dispersion particles.

Authors:  Yuri M Yevdokimov; Sergey G Skuridin; Sergey V Semenov; Ljubov A Dadinova; Viktor I Salyanov; Efim I Kats
Journal:  J Biol Phys       Date:  2016-12-27       Impact factor: 1.365

6.  Undulations enhance the effect of helical structure on DNA interactions.

Authors:  D J Lee; A Wynveen; A A Kornyshev; S Leikin
Journal:  J Phys Chem B       Date:  2010-09-09       Impact factor: 2.991

7.  Symmetry of electrostatic interaction between pyrophosphate DNA molecules.

Authors:  V L Golo; E I Kats; S A Kuznetsova; Yu S Volkov
Journal:  Eur Phys J E Soft Matter       Date:  2010-01-20       Impact factor: 1.890

8.  Equilibrium phase diagram and thermal responses of charged DNA-virus rod-suspensions at low ionic strengths.

Authors:  Kyongok Kang
Journal:  Sci Rep       Date:  2021-02-10       Impact factor: 4.379

9.  Chiral shape fluctuations and the origin of chirality in cholesteric phases of DNA origamis.

Authors:  Maxime M C Tortora; Garima Mishra; Domen Prešern; Jonathan P K Doye
Journal:  Sci Adv       Date:  2020-07-29       Impact factor: 14.136

  9 in total

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