Literature DB >> 33568655

Quantum chemical benchmark databases of gold-standard dimer interaction energies.

Alexander G Donchev1, Andrew G Taube2, Elizabeth Decolvenaere2, Cory Hargus2, Robert T McGibbon2, Ka-Hei Law2, Brent A Gregersen2, Je-Luen Li2, Kim Palmo2, Karthik Siva2, Michael Bergdorf2, John L Klepeis2, David E Shaw3,4.   

Abstract

Advances in computational chemistry create an ongoing need for larger and higher-quality datasets that characterize noncovalent molecular interactions. We present three benchmark collections of quantum mechanical data, covering approximately 3,700 distinct types of interacting molecule pairs. The first collection, which we refer to as DES370K, contains interaction energies for more than 370,000 dimer geometries. These were computed using the coupled-cluster method with single, double, and perturbative triple excitations [CCSD(T)], which is widely regarded as the gold-standard method in electronic structure theory. Our second benchmark collection, a core representative subset of DES370K called DES15K, is intended for more computationally demanding applications of the data. Finally, DES5M, our third collection, comprises interaction energies for nearly 5,000,000 dimer geometries; these were calculated using SNS-MP2, a machine learning approach that provides results with accuracy comparable to that of our coupled-cluster training data. These datasets may prove useful in the development of density functionals, empirically corrected wavefunction-based approaches, semi-empirical methods, force fields, and models trained using machine learning methods.

Entities:  

Year:  2021        PMID: 33568655      PMCID: PMC7876112          DOI: 10.1038/s41597-021-00833-x

Source DB:  PubMed          Journal:  Sci Data        ISSN: 2052-4463            Impact factor:   6.444


  49 in total

1.  Analytical energy gradients for local second-order Møller-Plesset perturbation theory using density fitting approximations.

Authors:  Martin Schütz; Hans-Joachim Werner; Roland Lindh; Frederick R Manby
Journal:  J Chem Phys       Date:  2004-07-08       Impact factor: 3.488

2.  Large-scale symmetry-adapted perturbation theory computations via density fitting and Laplace transformation techniques: investigating the fundamental forces of DNA-intercalator interactions.

Authors:  Edward G Hohenstein; Robert M Parrish; C David Sherrill; Justin M Turney; Henry F Schaefer
Journal:  J Chem Phys       Date:  2011-11-07       Impact factor: 3.488

3.  All-electron and relativistic pseudopotential studies for the group 1 element polarizabilities from K to element 119.

Authors:  Ivan S Lim; Peter Schwerdtfeger; Bernhard Metz; Hermann Stoll
Journal:  J Chem Phys       Date:  2005-03-08       Impact factor: 3.488

4.  Systematically convergent correlation consistent basis sets for molecular core-valence correlation effects: the third-row atoms gallium through krypton.

Authors:  Nathan J Deyonker; Kirk A Peterson; Angela K Wilson
Journal:  J Phys Chem A       Date:  2007-10-06       Impact factor: 2.781

5.  Revised Damping Parameters for the D3 Dispersion Correction to Density Functional Theory.

Authors:  Daniel G A Smith; Lori A Burns; Konrad Patkowski; C David Sherrill
Journal:  J Phys Chem Lett       Date:  2016-05-27       Impact factor: 6.475

6.  Parameterization of a B3LYP specific correction for non-covalent interactions and basis set superposition error on a gigantic dataset of CCSD(T) quality non-covalent interaction energies.

Authors:  Severin T Schneebeli; Arteum D Bochevarov; Richard A Friesner
Journal:  J Chem Theory Comput       Date:  2011-03-08       Impact factor: 6.006

7.  Revised Parameters for the AMOEBA Polarizable Atomic Multipole Water Model.

Authors:  Marie L Laury; Lee-Ping Wang; Vijay S Pande; Teresa Head-Gordon; Jay W Ponder
Journal:  J Phys Chem B       Date:  2015-02-26       Impact factor: 2.991

8.  Improving the accuracy of Møller-Plesset perturbation theory with neural networks.

Authors:  Robert T McGibbon; Andrew G Taube; Alexander G Donchev; Karthik Siva; Felipe Hernández; Cory Hargus; Ka-Hei Law; John L Klepeis; David E Shaw
Journal:  J Chem Phys       Date:  2017-10-28       Impact factor: 3.488

9.  The BioFragment Database (BFDb): An open-data platform for computational chemistry analysis of noncovalent interactions.

Authors:  Lori A Burns; John C Faver; Zheng Zheng; Michael S Marshall; Daniel G A Smith; Kenno Vanommeslaeghe; Alexander D MacKerell; Kenneth M Merz; C David Sherrill
Journal:  J Chem Phys       Date:  2017-10-28       Impact factor: 3.488

10.  Machine-learned approximations to Density Functional Theory Hamiltonians.

Authors:  Ganesh Hegde; R Chris Bowen
Journal:  Sci Rep       Date:  2017-02-15       Impact factor: 4.379

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  4 in total

1.  A Minimum Quantum Chemistry CCSD(T)/CBS Data Set of Dimeric Interaction Energies for Small Organic Functional Groups: Heterodimers.

Authors:  Hsing-Hsiang Huang; Yi-Siang Wang; Sheng D Chao
Journal:  ACS Omega       Date:  2022-05-31

Review 2.  Ab Initio Machine Learning in Chemical Compound Space.

Authors:  Bing Huang; O Anatole von Lilienfeld
Journal:  Chem Rev       Date:  2021-08-13       Impact factor: 60.622

3.  Quantum chemical benchmark databases of gold-standard dimer interaction energies.

Authors:  Alexander G Donchev; Andrew G Taube; Elizabeth Decolvenaere; Cory Hargus; Robert T McGibbon; Ka-Hei Law; Brent A Gregersen; Je-Luen Li; Kim Palmo; Karthik Siva; Michael Bergdorf; John L Klepeis; David E Shaw
Journal:  Sci Data       Date:  2021-02-10       Impact factor: 6.444

4.  Implicitly perturbed Hamiltonian as a class of versatile and general-purpose molecular representations for machine learning.

Authors:  Amin Alibakhshi; Bernd Hartke
Journal:  Nat Commun       Date:  2022-03-10       Impact factor: 17.694

  4 in total

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