Literature DB >> 33566238

Heminiphilus faecis gen. nov., sp. nov., a member of the family Muribaculaceae, isolated from mouse faeces and emended description of the genus Muribaculum.

Jun Kyu Park1,2,3, Dong-Ho Chang1, Moon-Soo Rhee4, Haeyoung Jeong5,6, Jinhoi Song2, Bon Jeong Ku7, Seung Bum Kim3, Mina Lee8, Byoung-Chan Kim9,10,11.   

Abstract

The novel strain AM35T was isolated from the faeces of C57BL/6 mice. These cells are strictly anaerobic, gram negative, oxidase negative, catalase positive, rod-shaped and non-motile. The strain produced creamy yellowish colonies on brain heart infusion (BHI) agar with hemin. Growth was investigated at 30-41 °C in the presence of 0.5-1.5% (w/v) NaCl at pH 6.5-8.5. Taxonomic analysis based on 16S rRNA gene sequencing revealed that strain AM35T is affiliated with the family Muribaculaceae and closely related to the genus Muribaculum. The genomic DNA G + C content of strain AM35T was 47.8 mol%. We detected the whole-cell sugars ribose and galactose; meso-2,6-diaminopimelic acid was absent. The major fatty acids (> 10%) were anteiso-C15:0 and iso-C15:0; the major polar lipid was phosphatidylethanolamine. The major respiratory quinones were MK-10 and MK-11. Based on our phylogenetic, phenotypic and chemotaxonomic analyses, strain AM35T represents a novel genus within the family Muribaculaceae, for which we propose the name Heminiphilus faecis gen. nov., sp. nov. The type strain of Heminiphilus faecis gen. nov., sp. nov. is AM35T (= KCTC 15907 T = DSM 110151 T).

Entities:  

Keywords:  Faeces; Heminiphilus; Mouse; Muribaculaceae; S24-7

Year:  2021        PMID: 33566238     DOI: 10.1007/s10482-021-01521-x

Source DB:  PubMed          Journal:  Antonie Van Leeuwenhoek        ISSN: 0003-6072            Impact factor:   2.271


  20 in total

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Authors:  Anton Bankevich; Sergey Nurk; Dmitry Antipov; Alexey A Gurevich; Mikhail Dvorkin; Alexander S Kulikov; Valery M Lesin; Sergey I Nikolenko; Son Pham; Andrey D Prjibelski; Alexey V Pyshkin; Alexander V Sirotkin; Nikolay Vyahhi; Glenn Tesler; Max A Alekseyev; Pavel A Pevzner
Journal:  J Comput Biol       Date:  2012-04-16       Impact factor: 1.479

2.  Gut microbial markers are associated with diabetes onset, regulatory imbalance, and IFN-γ level in NOD mice.

Authors:  Ł Krych; D S Nielsen; A K Hansen; C H F Hansen
Journal:  Gut Microbes       Date:  2015-02-03

3.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

4.  Shifts in gut microbiota composition in an APP/PSS1 transgenic mouse model of Alzheimer's disease during lifespan.

Authors:  C Bäuerl; M C Collado; A Diaz Cuevas; J Viña; G Pérez Martínez
Journal:  Lett Appl Microbiol       Date:  2018-04-16       Impact factor: 2.858

5.  A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences.

Authors:  M Kimura
Journal:  J Mol Evol       Date:  1980-12       Impact factor: 2.395

6.  Evolutionary trees from DNA sequences: a maximum likelihood approach.

Authors:  J Felsenstein
Journal:  J Mol Evol       Date:  1981       Impact factor: 2.395

7.  Species identity dominates over environment in shaping the microbiota of small mammals.

Authors:  S C L Knowles; R M Eccles; L Baltrūnaitė
Journal:  Ecol Lett       Date:  2019-03-13       Impact factor: 9.492

8.  The Mouse Intestinal Bacterial Collection (miBC) provides host-specific insight into cultured diversity and functional potential of the gut microbiota.

Authors:  Ilias Lagkouvardos; Rüdiger Pukall; Birte Abt; Bärbel U Foesel; Jan P Meier-Kolthoff; Neeraj Kumar; Anne Bresciani; Inés Martínez; Sarah Just; Caroline Ziegler; Sandrine Brugiroux; Debora Garzetti; Mareike Wenning; Thi P N Bui; Jun Wang; Floor Hugenholtz; Caroline M Plugge; Daniel A Peterson; Mathias W Hornef; John F Baines; Hauke Smidt; Jens Walter; Karsten Kristiansen; Henrik B Nielsen; Dirk Haller; Jörg Overmann; Bärbel Stecher; Thomas Clavel
Journal:  Nat Microbiol       Date:  2016-08-08       Impact factor: 17.745

9.  RASTtk: a modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes.

Authors:  Thomas Brettin; James J Davis; Terry Disz; Robert A Edwards; Svetlana Gerdes; Gary J Olsen; Robert Olson; Ross Overbeek; Bruce Parrello; Gordon D Pusch; Maulik Shukla; James A Thomason; Rick Stevens; Veronika Vonstein; Alice R Wattam; Fangfang Xia
Journal:  Sci Rep       Date:  2015-02-10       Impact factor: 4.379

10.  Exercise prevents weight gain and alters the gut microbiota in a mouse model of high fat diet-induced obesity.

Authors:  Christian C Evans; Kathy J LePard; Jeff W Kwak; Mary C Stancukas; Samantha Laskowski; Joseph Dougherty; Laura Moulton; Adam Glawe; Yunwei Wang; Vanessa Leone; Dionysios A Antonopoulos; Dan Smith; Eugene B Chang; Mae J Ciancio
Journal:  PLoS One       Date:  2014-03-26       Impact factor: 3.240

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  2 in total

1.  Response of a Coastal Microbial Community to Olivine Addition in the Muping Marine Ranch, Yantai.

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Journal:  Front Microbiol       Date:  2022-02-10       Impact factor: 5.640

2.  Longitudinal Changes in Diet Cause Repeatable and Largely Reversible Shifts in Gut Microbial Communities of Laboratory Mice and Are Observed across Segments of the Entire Intestinal Tract.

Authors:  Adrian Low; Melissa Soh; Sou Miyake; Vanessa Zhi Jie Aw; Jian Feng; Adeline Wong; Henning Seedorf
Journal:  Int J Mol Sci       Date:  2021-06-01       Impact factor: 5.923

  2 in total

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