Literature DB >> 33563990

Transcriptome and translatome of CO2 fixing acetogens under heterotrophic and autotrophic conditions.

Yoseb Song1, Jiyun Bae1, Jongoh Shin1, Sangrak Jin1, Jung-Kul Lee2, Sun Chang Kim1,3,4, Suhyung Cho1,3, Byung-Kwan Cho5,6,7.   

Abstract

Acetogens are anaerobic bacteria that utilise gaseous feedstocks such as carbon monoxide (CO) and carbon dioxide (CO2) to synthesise biomass and various metabolites via the energetically efficient Wood-Ljungdahl pathway. Because of this pathway, acetogens have been considered as a novel platform to produce biochemicals from gaseous feedstocks, potentially replacing the conventional thermochemical processes. Despite their advantages, a lack of systematic understanding of the transcriptional and translational regulation in acetogens during autotrophic growth limits the rational strain design to produce the desired products. To overcome this problem, we presented RNA sequencing and ribosome profiling data of four acetogens cultivated under heterotrophic and autotrophic conditions, providing data on genome-scale transcriptional and translational responses of acetogens during CO2 fixation. These data facilitate the discovery of regulatory elements embedded in their genomes, which could be utilised to engineer strains to achieve better growth and productivity. We anticipate that these data will expand our understanding of the processes of CO2 fixation and will help in the designing of strains for the desired biochemical production.

Entities:  

Year:  2021        PMID: 33563990      PMCID: PMC7873083          DOI: 10.1038/s41597-021-00837-7

Source DB:  PubMed          Journal:  Sci Data        ISSN: 2052-4463            Impact factor:   6.444


  18 in total

Review 1.  Biomass-derived syngas fermentation into biofuels: Opportunities and challenges.

Authors:  Pradeep Chaminda Munasinghe; Samir Kumar Khanal
Journal:  Bioresour Technol       Date:  2010-01-21       Impact factor: 9.642

Review 2.  C1-carbon sources for chemical and fuel production by microbial gas fermentation.

Authors:  Peter Dürre; Bernhard J Eikmanns
Journal:  Curr Opin Biotechnol       Date:  2015-04-02       Impact factor: 9.740

Review 3.  Alternative pathways of carbon dioxide fixation: insights into the early evolution of life?

Authors:  Georg Fuchs
Journal:  Annu Rev Microbiol       Date:  2011       Impact factor: 15.500

Review 4.  Autotrophy at the thermodynamic limit of life: a model for energy conservation in acetogenic bacteria.

Authors:  Kai Schuchmann; Volker Müller
Journal:  Nat Rev Microbiol       Date:  2014-11-10       Impact factor: 60.633

Review 5.  Methanogenic archaea: ecologically relevant differences in energy conservation.

Authors:  Rudolf K Thauer; Anne-Kristin Kaster; Henning Seedorf; Wolfgang Buckel; Reiner Hedderich
Journal:  Nat Rev Microbiol       Date:  2008-06-30       Impact factor: 60.633

6.  Clarifying the Translational Pausing Landscape in Bacteria by Ribosome Profiling.

Authors:  Fuad Mohammad; Christopher J Woolstenhulme; Rachel Green; Allen R Buskirk
Journal:  Cell Rep       Date:  2016-01-14       Impact factor: 9.423

Review 7.  Enzymology of the wood-Ljungdahl pathway of acetogenesis.

Authors:  Stephen W Ragsdale
Journal:  Ann N Y Acad Sci       Date:  2008-03       Impact factor: 5.691

Review 8.  Analysis of the Core Genome and Pan-Genome of Autotrophic Acetogenic Bacteria.

Authors:  Jongoh Shin; Yoseb Song; Yujin Jeong; Byung-Kwan Cho
Journal:  Front Microbiol       Date:  2016-09-28       Impact factor: 5.640

9.  Genome-scale analysis of syngas fermenting acetogenic bacteria reveals the translational regulation for its autotrophic growth.

Authors:  Yoseb Song; Jongoh Shin; Sangrak Jin; Jung-Kul Lee; Dong Rip Kim; Sun Chang Kim; Suhyung Cho; Byung-Kwan Cho
Journal:  BMC Genomics       Date:  2018-11-23       Impact factor: 3.969

10.  Functional cooperation of the glycine synthase-reductase and Wood-Ljungdahl pathways for autotrophic growth of Clostridium drakei.

Authors:  Yoseb Song; Jin Soo Lee; Jongoh Shin; Gyu Min Lee; Sangrak Jin; Seulgi Kang; Jung-Kul Lee; Dong Rip Kim; Eun Yeol Lee; Sun Chang Kim; Suhyung Cho; Donghyuk Kim; Byung-Kwan Cho
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-13       Impact factor: 11.205

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