Literature DB >> 33563121

How FAIR are plant sciences in the twenty-first century? The pressing need for reproducibility in plant ecology and evolution.

Saúl Manzano1, Adele C M Julier1.   

Abstract

The need for open, reproducible science is of growing concern in the twenty-first century, with multiple initiatives like the widely supported FAIR principles advocating for data to be Findable, Accessible, Interoperable and Reusable. Plant ecological and evolutionary studies are not exempt from the need to ensure that the data upon which their findings are based are accessible and allow for replication in accordance with the FAIR principles. However, it is common that the collection and curation of herbarium specimens, a foundational aspect of studies involving plants, is neglected by authors. Without publicly available specimens, huge numbers of studies that rely on the field identification of plants are fundamentally not reproducible. We argue that the collection and public availability of herbarium specimens is not only good botanical practice but is also fundamental in ensuring that plant ecological and evolutionary studies are replicable, and thus scientifically sound. Data repositories that adhere to the FAIR principles must make sure that the original data are traceable to and re-examinable at their empirical source. In order to secure replicability, and adherence to the FAIR principles, substantial changes need to be brought about to restore the practice of collecting and curating specimens, to educate students of their importance, and to properly fund the herbaria which house them.

Entities:  

Keywords:  FAIR principles; diversity; open science; plant ecology; plant evolution; reproducibility

Mesh:

Year:  2021        PMID: 33563121      PMCID: PMC7893239          DOI: 10.1098/rspb.2020.2597

Source DB:  PubMed          Journal:  Proc Biol Sci        ISSN: 0962-8452            Impact factor:   5.349


  10 in total

1.  Widespread mistaken identity in tropical plant collections.

Authors:  Zoë A Goodwin; David J Harris; Denis Filer; John R I Wood; Robert W Scotland
Journal:  Curr Biol       Date:  2015-11-16       Impact factor: 10.834

2.  Natural history collections as sources of long-term datasets.

Authors:  Adrian M Lister
Journal:  Trends Ecol Evol       Date:  2011-01-20       Impact factor: 17.712

3.  Specimens as primary data: museums and 'open science'.

Authors:  Menno Schilthuizen; Charles S Vairappan; Eleanor M Slade; Darren J Mann; Jeremy A Miller
Journal:  Trends Ecol Evol       Date:  2015-03-23       Impact factor: 17.712

4.  The Increasing Disconnection of Primary Biodiversity Data from Specimens: How Does It Happen and How to Handle It?

Authors:  Julien Troudet; Régine Vignes-Lebbe; Philippe Grandcolas; Frédéric Legendre
Journal:  Syst Biol       Date:  2018-11-01       Impact factor: 15.683

5.  The ecologist who wants to map everything.

Authors:  Aisling Irwin
Journal:  Nature       Date:  2019-09       Impact factor: 49.962

6.  The Open Knowledge Foundation: open data means better science.

Authors:  Jennifer C Molloy
Journal:  PLoS Biol       Date:  2011-12-06       Impact factor: 8.029

7.  Application of digital field photographs as documents for tropical plant inventory.

Authors:  James V LaFrankie; Anna I Chua
Journal:  Appl Plant Sci       Date:  2015-05-11       Impact factor: 1.936

8.  Low availability of code in ecology: A call for urgent action.

Authors:  Antica Culina; Ilona van den Berg; Simon Evans; Alfredo Sánchez-Tójar
Journal:  PLoS Biol       Date:  2020-07-28       Impact factor: 8.029

9.  Why vouchers matter in botanical research.

Authors:  Theresa M Culley
Journal:  Appl Plant Sci       Date:  2013-10-29       Impact factor: 1.936

10.  The FAIR Guiding Principles for scientific data management and stewardship.

Authors:  Mark D Wilkinson; Michel Dumontier; I Jsbrand Jan Aalbersberg; Gabrielle Appleton; Myles Axton; Arie Baak; Niklas Blomberg; Jan-Willem Boiten; Luiz Bonino da Silva Santos; Philip E Bourne; Jildau Bouwman; Anthony J Brookes; Tim Clark; Mercè Crosas; Ingrid Dillo; Olivier Dumon; Scott Edmunds; Chris T Evelo; Richard Finkers; Alejandra Gonzalez-Beltran; Alasdair J G Gray; Paul Groth; Carole Goble; Jeffrey S Grethe; Jaap Heringa; Peter A C 't Hoen; Rob Hooft; Tobias Kuhn; Ruben Kok; Joost Kok; Scott J Lusher; Maryann E Martone; Albert Mons; Abel L Packer; Bengt Persson; Philippe Rocca-Serra; Marco Roos; Rene van Schaik; Susanna-Assunta Sansone; Erik Schultes; Thierry Sengstag; Ted Slater; George Strawn; Morris A Swertz; Mark Thompson; Johan van der Lei; Erik van Mulligen; Jan Velterop; Andra Waagmeester; Peter Wittenburg; Katherine Wolstencroft; Jun Zhao; Barend Mons
Journal:  Sci Data       Date:  2016-03-15       Impact factor: 6.444

  10 in total

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