Literature DB >> 33556822

The nuclear pore complex and the genome: organizing and regulatory principles.

Pau Pascual-Garcia1, Maya Capelson2.   

Abstract

The nuclear pore complex (NPC) is a massive nuclear envelope-embedded protein complex, the canonical function of which is to mediate selective nucleocytoplasmic transport. In addition to its transport function, the NPC has been shown to interact with the underlying chromatin and to influence both activating and repressive gene regulatory processes, contributing to the establishment and the epigenetic maintenance of cell identity. In this review, we discuss diverse gene regulatory functions of NPC components and emerging mechanisms underlying these functions, including roles in genome architecture, transcription complex assembly, chromatin remodeling, and coordination of transcription and mRNA export. These functional roles highlight the importance of the NPC as a nuclear scaffold directing genome organization and function.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2021        PMID: 33556822      PMCID: PMC8084963          DOI: 10.1016/j.gde.2021.01.005

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  70 in total

Review 1.  The nuclear pore complex and nuclear transport.

Authors:  Susan R Wente; Michael P Rout
Journal:  Cold Spring Harb Perspect Biol       Date:  2010-07-14       Impact factor: 10.005

2.  Identification of long-lived proteins reveals exceptional stability of essential cellular structures.

Authors:  Brandon H Toyama; Jeffrey N Savas; Sung Kyu Park; Michael S Harris; Nicholas T Ingolia; John R Yates; Martin W Hetzer
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

3.  Perinuclear Mlp proteins downregulate gene expression in response to a defect in mRNA export.

Authors:  Patrizia Vinciguerra; Nahid Iglesias; Jurgi Camblong; Daniel Zenklusen; Françoise Stutz
Journal:  EMBO J       Date:  2005-02-03       Impact factor: 11.598

4.  Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex.

Authors:  Sue Mei Tan-Wong; Hashanthi D Wijayatilake; Nick J Proudfoot
Journal:  Genes Dev       Date:  2009-11-15       Impact factor: 11.361

5.  Native Chromatin Proteomics Reveals a Role for Specific Nucleoporins in Heterochromatin Organization and Maintenance.

Authors:  Nahid Iglesias; Joao A Paulo; Antonis Tatarakis; Xiaoyi Wang; Amanda L Edwards; Natarajan V Bhanu; Benjamin A Garcia; Wilhelm Haas; Steven P Gygi; Danesh Moazed
Journal:  Mol Cell       Date:  2019-11-26       Impact factor: 17.970

6.  Core Components of the Nuclear Pore Bind Distinct States of Chromatin and Contribute to Polycomb Repression.

Authors:  Alejandro Gozalo; Ashley Duke; Yemin Lan; Pau Pascual-Garcia; Jessica A Talamas; Son C Nguyen; Parisha P Shah; Rajan Jain; Eric F Joyce; Maya Capelson
Journal:  Mol Cell       Date:  2019-11-26       Impact factor: 17.970

7.  Transcription factor binding to a DNA zip code controls interchromosomal clustering at the nuclear periphery.

Authors:  Donna Garvey Brickner; Sara Ahmed; Lauren Meldi; Abbey Thompson; Will Light; Matthew Young; Taylor L Hickman; Feixia Chu; Emmanuelle Fabre; Jason H Brickner
Journal:  Dev Cell       Date:  2012-05-10       Impact factor: 12.270

Review 8.  Nuclear pore complexes in development and tissue homeostasis.

Authors:  Valeria Guglielmi; Stephen Sakuma; Maximiliano A D'Angelo
Journal:  Development       Date:  2020-12-15       Impact factor: 6.868

9.  H2A.Z-mediated localization of genes at the nuclear periphery confers epigenetic memory of previous transcriptional state.

Authors:  Donna Garvey Brickner; Ivelisse Cajigas; Yvonne Fondufe-Mittendorf; Sara Ahmed; Pei-Chih Lee; Jonathan Widom; Jason H Brickner
Journal:  PLoS Biol       Date:  2007-04       Impact factor: 8.029

10.  Subnuclear positioning and interchromosomal clustering of the GAL1-10 locus are controlled by separable, interdependent mechanisms.

Authors:  Donna Garvey Brickner; Varun Sood; Evelina Tutucci; Robert Coukos; Kayla Viets; Robert H Singer; Jason H Brickner
Journal:  Mol Biol Cell       Date:  2016-08-03       Impact factor: 4.138

View more
  6 in total

1.  Structure of the pre-mRNA leakage 39-kDa protein reveals a single domain of integrated zf-C3HC and Rsm1 modules.

Authors:  Hideharu Hashimoto; Daniel H Ramirez; Ophélie Lautier; Natalie Pawlak; Günter Blobel; Benoît Palancade; Erik W Debler
Journal:  Sci Rep       Date:  2022-10-21       Impact factor: 4.996

2.  LncRNA RUS shapes the gene expression program towards neurogenesis.

Authors:  Marius F Schneider; Veronika Müller; Stephan A Müller; Stefan F Lichtenthaler; Peter B Becker; Johanna C Scheuermann
Journal:  Life Sci Alliance       Date:  2022-06-10

3.  Assembly principle of a membrane-anchored nuclear pore basket scaffold.

Authors:  Jakub Cibulka; Fabio Bisaccia; Katarina Radisavljević; Ricardo M Gudino Carrillo; Alwin Köhler
Journal:  Sci Adv       Date:  2022-02-11       Impact factor: 14.136

4.  Quantitative analysis of nuclear pore complex organization in Schizosaccharomyces pombe.

Authors:  Joseph M Varberg; Jay R Unruh; Andrew J Bestul; Azqa A Khan; Sue L Jaspersen
Journal:  Life Sci Alliance       Date:  2022-03-30

5.  Nucleoporin107 mediates female sexual differentiation via Dsx.

Authors:  Tikva Shore; Tgst Levi; Rachel Kalifa; Amatzia Dreifuss; Dina Rekler; Ariella Weinberg-Shukron; Yuval Nevo; Tzofia Bialistoky; Victoria Moyal; Merav Yaffa Gold; Shira Leebhoff; David Zangen; Girish Deshpande; Offer Gerlitz
Journal:  Elife       Date:  2022-03-21       Impact factor: 8.713

Review 6.  Dunking into the Lipid Bilayer: How Direct Membrane Binding of Nucleoporins Can Contribute to Nuclear Pore Complex Structure and Assembly.

Authors:  Mohamed Hamed; Wolfram Antonin
Journal:  Cells       Date:  2021-12-20       Impact factor: 6.600

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.