Literature DB >> 33555350

Human Rev1 relies on insert-2 to promote selective binding and accurate replication of stabilized G-quadruplex motifs.

Amit Ketkar1, Lane Smith1, Callie Johnson2, Alyssa Richey2, Makayla Berry1, Jessica H Hartman3, Leena Maddukuri1, Megan R Reed1, Julie E C Gunderson4, Justin W C Leung5, Robert L Eoff1.   

Abstract

We previously reported that human Rev1 (hRev1) bound to a parallel-stranded G-quadruplex (G4) from the c-MYC promoter with high affinity. We have extended those results to include other G4 motifs, finding that hRev1 exhibited stronger affinity for parallel-stranded G4 than either anti-parallel or hybrid folds. Amino acids in the αE helix of insert-2 were identified as being important for G4 binding. Mutating E466 and Y470 to alanine selectively perturbed G4 binding affinity. The E466K mutant restored wild-type G4 binding properties. Using a forward mutagenesis assay, we discovered that loss of hRev1 increased G4 mutation frequency >200-fold compared to the control sequence. Base substitutions and deletions occurred around and within the G4 motif. Pyridostatin (PDS) exacerbated this effect, as the mutation frequency increased >700-fold over control and deletions upstream of the G4 site more than doubled. Mutagenic replication of G4 DNA (±PDS) was partially rescued by wild-type and E466K hRev1. The E466A or Y470A mutants failed to suppress the PDS-induced increase in G4 mutation frequency. These findings have implications for the role of insert-2, a motif conserved in vertebrates but not yeast or plants, in Rev1-mediated suppression of mutagenesis during G4 replication.
© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research.

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Year:  2021        PMID: 33555350      PMCID: PMC7913688          DOI: 10.1093/nar/gkab041

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   19.160


  61 in total

1.  Solution structure of the biologically relevant G-quadruplex element in the human c-MYC promoter. Implications for G-quadruplex stabilization.

Authors:  Attila Ambrus; Ding Chen; Jixun Dai; Roger A Jones; Danzhou Yang
Journal:  Biochemistry       Date:  2005-02-15       Impact factor: 3.162

2.  Seven essential questions on G-quadruplexes.

Authors:  Sebastian L B König; Amanda C Evans; Julian L Huppert
Journal:  Biomol Concepts       Date:  2010-08-01

3.  Thermodynamic stability and folding kinetics of the major G-quadruplex and its loop isomers formed in the nuclease hypersensitive element in the human c-Myc promoter: effect of loops and flanking segments on the stability of parallel-stranded intramolecular G-quadruplexes.

Authors:  Emmanuel Hatzakis; Keika Okamoto; Danzhou Yang
Journal:  Biochemistry       Date:  2010-11-02       Impact factor: 3.162

Review 4.  Existence and consequences of G-quadruplex structures in DNA.

Authors:  Pierre Murat; Shankar Balasubramanian
Journal:  Curr Opin Genet Dev       Date:  2013-12-31       Impact factor: 5.578

5.  G-quadruplex DNA sequences are evolutionarily conserved and associated with distinct genomic features in Saccharomyces cerevisiae.

Authors:  John A Capra; Katrin Paeschke; Mona Singh; Virginia A Zakian
Journal:  PLoS Comput Biol       Date:  2010-07-22       Impact factor: 4.475

6.  Structure of a (3+1) hybrid G-quadruplex in the PARP1 promoter.

Authors:  Anjali Sengar; J Jeya Vandana; Vicki S Chambers; Marco Di Antonio; Fernaldo Richtia Winnerdy; Shankar Balasubramanian; Anh Tuân Phan
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

7.  The Expression of Human DNA Helicase B Is Affected by G-Quadruplexes in the Promoter.

Authors:  Maroof Khan Zafar; Lindsey Hazeslip; Muhammad Zain Chauhan; Alicia K Byrd
Journal:  Biochemistry       Date:  2020-06-07       Impact factor: 3.162

8.  A Role for the Fifth G-Track in G-Quadruplex Forming Oncogene Promoter Sequences during Oxidative Stress: Do These "Spare Tires" Have an Evolved Function?

Authors:  Aaron M Fleming; Jia Zhou; Susan S Wallace; Cynthia J Burrows
Journal:  ACS Cent Sci       Date:  2015-07-06       Impact factor: 14.553

9.  Rev1 is a base excision repair enzyme with 5'-deoxyribose phosphate lyase activity.

Authors:  Rajendra Prasad; Vladimir Poltoratsky; Esther W Hou; Samuel H Wilson
Journal:  Nucleic Acids Res       Date:  2016-09-28       Impact factor: 16.971

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  2 in total

1.  Mechanism of nucleotide discrimination by the translesion synthesis polymerase Rev1.

Authors:  Tyler M Weaver; Timothy H Click; Thu H Khoang; M Todd Washington; Pratul K Agarwal; Bret D Freudenthal
Journal:  Nat Commun       Date:  2022-05-24       Impact factor: 17.694

Review 2.  Impact of G-Quadruplexes and Chronic Inflammation on Genome Instability: Additive Effects during Carcinogenesis.

Authors:  MaryElizabeth Stein; Kristin A Eckert
Journal:  Genes (Basel)       Date:  2021-11-09       Impact factor: 4.096

  2 in total

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