Literature DB >> 33553644

The complete chloroplast genome of Sargassum hemiphyllum var. Chinense (Sargassaceae, Phaeophyceae) and its phylogenetic analysis.

Xiaowen Wu1, Peng Zhang1, Yonghua Zhang2, Tiegan Wang1.   

Abstract

Sargassum hemiphyllum (Turner) C. Agardh is an important brown macroalga. In this study, we presented the complete chloroplast genome of its variety S. hemiphyllum var. chinense using genome skimming approach. Circular mapping revealed its sequence length was 124,319 bp, with a large single-copy region (LSC, 73,505 bp) and a small single copy region (SSC, 39,922 bp) separated by a pair of inverted repeats (IRs, 5446 bp). Its chloroplast genome contained 173 genes, including 139 protein-coding, 6 rRNA, and 28 tRNA genes. The phylogenetic analysis indicated that S. hemiphyllum var. chinense was closely related with S. confusum.
© 2021 The Author(s). Published by Informa UK Limited, trading as Taylor & Francis Group.

Entities:  

Keywords:  Sargassum hemiphyllum; chloroplast genome; phylogenomic

Year:  2021        PMID： 33553644      PMCID： PMC7850454          DOI： 10.1080/23802359.2020.1863165

Source DB:  PubMed          Journal:  Mitochondrial DNA B Resour        ISSN： 2380-2359            Impact factor:   0.658


  6 in total

1.  Automatic annotation of organellar genomes with DOGMA.

Authors:  Stacia K Wyman; Robert K Jansen; Jeffrey L Boore
Journal:  Bioinformatics       Date:  2004-06-04       Impact factor: 6.937

2.  Phylogeography of the marine macroalga Sargassum hemiphyllum (Phaeophyceae, Heterokontophyta) in northwestern Pacific.

Authors:  Chi Chiu Cheang; Ka Hou Chu; Put O Ang
Journal:  Mol Ecol       Date:  2010-06-24       Impact factor: 6.185

3.  Complete mitochondrial genome of the brown alga Sargassum hemiphyllum (Sargassaceae, Phaeophyceae): comparative analyses.

Authors:  Feng Liu; Shaojun Pang; Weizhou Chen
Journal:  Mitochondrial DNA A DNA Mapp Seq Anal       Date:  2014-08-27       Impact factor: 1.514

4.  MORPHOLOGICAL AND GENETIC VARIATION IN THE POPULATIONS OF SARGASSUM HEMIPHYLLUM (PHAEOPHYCEAE) IN THE NORTHWESTERN PACIFIC(1).

Authors:  Chi Chiu Cheang; Ka Hou Chu; Put O Ang
Journal:  J Phycol       Date:  2008-06-28       Impact factor: 2.923

5.  NOVOPlasty: de novo assembly of organelle genomes from whole genome data.

Authors:  Nicolas Dierckxsens; Patrick Mardulyn; Guillaume Smits
Journal:  Nucleic Acids Res       Date:  2017-02-28       Impact factor: 16.971

6.  The first complete chloroplast genome of Hylomecon japonica and its phylogenetic position within Papaveraceae.

Authors:  Yonghua Zhang; Joongku Lee; Xuelian Liu; Zhongshuai Sun
Journal:  Mitochondrial DNA B Resour       Date:  2019-07-12       Impact factor: 0.658
  6 in total

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