Literature DB >> 33553530

Draft genome sequence data of the facultative, thermophilic, xylanolytic bacterium Paenibacillus sp. strain DA-C8.

Chinda Chhe1,2, Ayaka Uke1, Sirilak Baramee1,3, Umbhorn Ungkulpasvich1,2, Chakrit Tachaapaikoon3, Patthra Pason3, Rattiya Waeonukul3, Khanok Ratanakhanokchai4, Akihiko Kosugi1,2.   

Abstract

Thermophilic, facultatively anaerobic, xylanolytic bacterial strain DA-C8 (=JCM34211 =DSM111723), newly isolated from compost, shows strong beechwood xylan degradation ability. Whole-genome sequencing of strain DA-C8 on the Ion GeneStudio S5 system yielded 69 contigs with a total size of 3,110,565 bp, 2,877 protein-coding sequences, and a G+C content of 52.3 mol%. Genome annotation revealed that strain DA-C8 possesses debranching enzymes, such as β-L-arabinofuranosidase and polygalacturonase, that are important for efficient degradation of xylan. As inferred from 16S rRNA sequences and average nucleotide identity values, the closest relatives of strain DA-C8 are Paenibacillus cisolokensis and P. chitinolyticus. The genomic data have been deposited at the National Center for Biotechnology Information (NCBI) under accession number BMAQ00000000.
© 2021 The Author(s).

Entities:  

Keywords:  Anaerobic bacteria; Draft genome; Facultative; Thermophilic; Xylan degradation

Year:  2021        PMID: 33553530      PMCID: PMC7859314          DOI: 10.1016/j.dib.2021.106784

Source DB:  PubMed          Journal:  Data Brief        ISSN: 2352-3409


  11 in total

1.  Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases.

Authors:  K Tamura
Journal:  Mol Biol Evol       Date:  1992-07       Impact factor: 16.240

Review 2.  Engineering Thermostable Microbial Xylanases Toward its Industrial Applications.

Authors:  Vishal Kumar; Arun Kumar Dangi; Pratyoosh Shukla
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3.  MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms.

Authors:  Sudhir Kumar; Glen Stecher; Michael Li; Christina Knyaz; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2018-06-01       Impact factor: 16.240

Review 4.  Cellulase and xylanase synergism in industrial biotechnology.

Authors:  Priyanka Bajaj; Ritu Mahajan
Journal:  Appl Microbiol Biotechnol       Date:  2019-10-18       Impact factor: 4.813

Review 5.  Production, characteristics, and biotechnological applications of microbial xylanases.

Authors:  Bijender Singh
Journal:  Appl Microbiol Biotechnol       Date:  2019-10-22       Impact factor: 4.813

6.  Purification and characterization of a multienzyme complex produced by Paenibacillus curdlanolyticus B-6.

Authors:  Patthra Pason; Akihiko Kosugi; Rattiya Waeonukul; Chakrit Tachaapaikoon; Khanok Ratanakhanokchai; Takamitsu Arai; Yoshinori Murata; Jun Nakajima; Yutaka Mori
Journal:  Appl Microbiol Biotechnol       Date:  2009-07-14       Impact factor: 4.813

7.  Characterization and high-quality draft genome sequence of Herbivorax saccincola A7, an anaerobic, alkaliphilic, thermophilic, cellulolytic, and xylanolytic bacterium.

Authors:  Shimpei Aikawa; Sirilak Baramee; Junjarus Sermsathanaswadi; Phakhinee Thianheng; Chakrit Tachaapaikoon; Ayumi Shikata; Rattiya Waeonukul; Patthra Pason; Khanok Ratanakhanokchai; Akihiko Kosugi
Journal:  Syst Appl Microbiol       Date:  2018-02-11       Impact factor: 4.022

Review 8.  Insights into the mechanism of enzymatic hydrolysis of xylan.

Authors:  L R S Moreira; E X F Filho
Journal:  Appl Microbiol Biotechnol       Date:  2016-04-25       Impact factor: 4.813

Review 9.  Current knowledge and perspectives of Paenibacillus: a review.

Authors:  Elliot Nicholas Grady; Jacqueline MacDonald; Linda Liu; Alex Richman; Ze-Chun Yuan
Journal:  Microb Cell Fact       Date:  2016-12-01       Impact factor: 5.328

10.  Draft genome sequence data of Paenbacillus curdlanolyticus B-6 possessing a unique xylanolytic-cellulolytic multienzyme system.

Authors:  Sirilak Baramee; Ayaka Uke; Chakrit Tachaapaikoon; Rattiya Waeonukul; Patthra Pason; Khanok Ratanakhanokchai; Akihiko Kosugi
Journal:  Data Brief       Date:  2020-08-22
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