Literature DB >> 33553518

Molecular characterization, phylogenetic and in silico sequence analysis data of trehalose biosynthesis genes; otsA and otsB from the deep sea halophilic actinobacteria, Streptomyces qinglanensis NIOT-DSA03.

Balakrishnan Meena1, Lawrance Anburajan1, Nambali Valsalan Vinithkumar1, Ramalingam Kirubagaran2, Gopal Dharani2.   

Abstract

Trehalose, a non-reducing disaccharide (α-D-glucopyranosyl-(1→1)-α-D-glucopyranoside) is a natural compound, which serves as a protective substance in halophilic bacterial cells. Trehalose biosynthesis genes (otsA and otsB) were PCR amplified from the genomic DNA of deep sea actinobacteria, Streptomyces qinglanensis NIOT-DSA03. The amplified genes were cloned and nucleotide sequences were determined. In silico sequence and phylogenetic analysis of nucleotides and amino acids of otsA and otsB sequences of S. qinglanensis were also determined. The experimental data described in this study will be helpful to develop a recombinant expression system to produce trehalose for biotechnological applications.
© 2021 The Authors.

Entities:  

Keywords:  Compatible solutes; Deep sea; Halophilic actinobacteria; Osmolytes; Trehalose genes

Year:  2021        PMID: 33553518      PMCID: PMC7851797          DOI: 10.1016/j.dib.2021.106727

Source DB:  PubMed          Journal:  Data Brief        ISSN: 2352-3409


  4 in total

1.  MEGA3: Integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment.

Authors:  Sudhir Kumar; Koichiro Tamura; Masatoshi Nei
Journal:  Brief Bioinform       Date:  2004-06       Impact factor: 11.622

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Authors:  A J Kutchma; M A Roberts; D B Knaebel; D L Crawford
Journal:  Biotechniques       Date:  1998-03       Impact factor: 1.993

3.  The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools.

Authors:  J D Thompson; T J Gibson; F Plewniak; F Jeanmougin; D G Higgins
Journal:  Nucleic Acids Res       Date:  1997-12-15       Impact factor: 16.971

Review 4.  Trehalose production: exploiting novel approaches.

Authors:  Chiara Schiraldi; Isabella Di Lernia; Mario De Rosa
Journal:  Trends Biotechnol       Date:  2002-10       Impact factor: 19.536

  4 in total

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