Literature DB >> 33552732

Coding potential of circRNAs: new discoveries and challenges.

Qingqing Miao1,2, Bing Ni3, Jun Tang1,2.   

Abstract

The circular (circ)RNAs are a newly recognized group of noncoding (nc)RNAs. Research to characterize the functional features of circRNAs has uncovered distinctive profiles of conservation, stability, specificity and complexity. However, a new line of evidence has indicated that although circRNAs can function as ncRNAs, such as in the role of miRNA sponges, they are also capable of coding proteins. This discovery is no accident. In the last century, scientist detected the ability of translate in some virus and artificial circRNAs. Artificial circRNA translation products are usually nonfunctional, whereas natural circRNA translation products are completely different. Those new proteins have various functions, which greatly broadens the new ideas and research direction for our research. These series findings also raise questions about whether circRNA is still classified as non-coding RNA. Here, we summarize the evidence concerning translation potential of circRNAs, including synthetic and endogenous circRNA translation ability, and discuss the mechanisms of circRNA translation. ©2021 Miao et al.

Entities:  

Keywords:  Translation; circRNAs; mRNA; miRNA; ncRNAs

Year:  2021        PMID: 33552732      PMCID: PMC7819118          DOI: 10.7717/peerj.10718

Source DB:  PubMed          Journal:  PeerJ        ISSN: 2167-8359            Impact factor:   2.984


  75 in total

1.  Conserved regulation of cardiac calcium uptake by peptides encoded in small open reading frames.

Authors:  Emile G Magny; Jose Ignacio Pueyo; Frances M G Pearl; Miguel Angel Cespedes; Jeremy E Niven; Sarah A Bishop; Juan Pablo Couso
Journal:  Science       Date:  2013-08-22       Impact factor: 47.728

2.  mTORC1 and muscle regeneration are regulated by the LINC00961-encoded SPAR polypeptide.

Authors:  Akinobu Matsumoto; Alessandra Pasut; Masaki Matsumoto; Riu Yamashita; Jacqueline Fung; Emanuele Monteleone; Alan Saghatelian; Keiichi I Nakayama; John G Clohessy; Pier Paolo Pandolfi
Journal:  Nature       Date:  2016-12-26       Impact factor: 49.962

Review 3.  The complexity of the translation ability of circRNAs.

Authors:  Javier T Granados-Riveron; Guillermo Aquino-Jarquin
Journal:  Biochim Biophys Acta       Date:  2016-07-19

4.  Hypoxia-inducible factor-1alpha mRNA contains an internal ribosome entry site that allows efficient translation during normoxia and hypoxia.

Authors:  Kenneth J D Lang; Andreas Kappel; Gregory J Goodall
Journal:  Mol Biol Cell       Date:  2002-05       Impact factor: 4.138

5.  A circularized sodium-calcium exchanger exon 2 transcript.

Authors:  X F Li; J Lytton
Journal:  J Biol Chem       Date:  1999-03-19       Impact factor: 5.157

6.  Detecting and characterizing circular RNAs.

Authors:  William R Jeck; Norman E Sharpless
Journal:  Nat Biotechnol       Date:  2014-05       Impact factor: 54.908

7.  Foxo3 circular RNA retards cell cycle progression via forming ternary complexes with p21 and CDK2.

Authors:  William W Du; Weining Yang; Elizabeth Liu; Zhenguo Yang; Preet Dhaliwal; Burton B Yang
Journal:  Nucleic Acids Res       Date:  2016-02-09       Impact factor: 16.971

8.  Circular RNA profiling reveals an abundant circHIPK3 that regulates cell growth by sponging multiple miRNAs.

Authors:  Qiupeng Zheng; Chunyang Bao; Weijie Guo; Shuyi Li; Jie Chen; Bing Chen; Yanting Luo; Dongbin Lyu; Yan Li; Guohai Shi; Linhui Liang; Jianren Gu; Xianghuo He; Shenglin Huang
Journal:  Nat Commun       Date:  2016-04-06       Impact factor: 14.919

9.  circRNADb: A comprehensive database for human circular RNAs with protein-coding annotations.

Authors:  Xiaoping Chen; Ping Han; Tao Zhou; Xuejiang Guo; Xiaofeng Song; Yan Li
Journal:  Sci Rep       Date:  2016-10-11       Impact factor: 4.379

10.  A Circular RNA Binds To and Activates AKT Phosphorylation and Nuclear Localization Reducing Apoptosis and Enhancing Cardiac Repair.

Authors:  Yan Zeng; William W Du; Yingya Wu; Zhenguo Yang; Faryal Mehwish Awan; Xiangmin Li; Weining Yang; Chao Zhang; Qi Yang; Albert Yee; Yu Chen; Fenghua Yang; Huan Sun; Ren Huang; Albert J Yee; Ren-Ke Li; Zhongkai Wu; Peter H Backx; Burton B Yang
Journal:  Theranostics       Date:  2017-08-29       Impact factor: 11.556

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  5 in total

Review 1.  Epigenetic and Transcriptomic Regulation Landscape in HPV+ Cancers: Biological and Clinical Implications.

Authors:  Rosario Castro-Oropeza; Patricia Piña-Sánchez
Journal:  Front Genet       Date:  2022-06-14       Impact factor: 4.772

2.  Differential Expression Profiles and Functional Prediction of circRNAs in Necrotizing Enterocolitis.

Authors:  Ya Pan; Wenjuan Chen; Xiangyun Yan; Boshi Yu; Shuwen Yao; Xiaohui Chen; Shuping Han
Journal:  Biomed Res Int       Date:  2021-11-03       Impact factor: 3.411

Review 3.  Non-coding RNAs and ferroptosis: potential implications for cancer therapy.

Authors:  Amar Balihodzic; Felix Prinz; Michael A Dengler; George A Calin; Philipp J Jost; Martin Pichler
Journal:  Cell Death Differ       Date:  2022-04-14       Impact factor: 12.067

4.  Prediction of Back-splicing sites for CircRNA formation based on convolutional neural networks.

Authors:  Zhen Shen; Yan Ling Shao; Wei Liu; Qinhu Zhang; Lin Yuan
Journal:  BMC Genomics       Date:  2022-08-12       Impact factor: 4.547

Review 5.  Non-Coding RNA in Systemic Sclerosis: A Valuable Tool for Translational and Personalized Medicine.

Authors:  Marta Rusek; Dorota Krasowska
Journal:  Genes (Basel)       Date:  2021-08-24       Impact factor: 4.096

  5 in total

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