Literature DB >> 33549848

Memorizing environmental signals through feedback and feedforward loops.

Yanfei Jiang1, Nan Hao2.   

Abstract

Cells in diverse organisms can store the information of previous environmental conditions for long periods of time. This form of cellular memory adjusts the cell's responses to future challenges, providing fitness advantages in fluctuating environments. Many biological functions, including cellular memory, are mediated by specific recurring patterns of interactions among proteins and genes, known as 'network motifs.' In this review, we focus on three well-characterized network motifs - negative feedback loops, positive feedback loops, and feedforward loops, which underlie different types of cellular memories. We describe the latest studies identifying these motifs in various molecular processes and discuss how the topologies and dynamics of these motifs can enable memory encoding and storage.
Copyright © 2021 The Author(s). Published by Elsevier Ltd.. All rights reserved.

Entities:  

Keywords:  Cellular memory; Computational modeling; Desensitization; Feedback loops; Messenger ribonucleoprotein (mRNP) granules; Network motifs; Phase separation; Priming; Systems biology

Mesh:

Year:  2021        PMID: 33549848      PMCID: PMC8058236          DOI: 10.1016/j.ceb.2020.11.008

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  57 in total

1.  cis Determinants of Promoter Threshold and Activation Timescale.

Authors:  Anders S Hansen; Erin K O'Shea
Journal:  Cell Rep       Date:  2015-08-13       Impact factor: 9.423

2.  Gene regulatory networks and developmental plasticity in the early sea urchin embryo: alternative deployment of the skeletogenic gene regulatory network.

Authors:  Charles A Ettensohn; Chisato Kitazawa; Melani S Cheers; Jennifer D Leonard; Tara Sharma
Journal:  Development       Date:  2007-08-01       Impact factor: 6.868

3.  Making cellular memories.

Authors:  Devin R Burrill; Pamela A Silver
Journal:  Cell       Date:  2010-01-08       Impact factor: 41.582

4.  Phase separation of a yeast prion protein promotes cellular fitness.

Authors:  Titus M Franzmann; Marcus Jahnel; Andrei Pozniakovsky; Julia Mahamid; Alex S Holehouse; Elisabeth Nüske; Doris Richter; Wolfgang Baumeister; Stephan W Grill; Rohit V Pappu; Anthony A Hyman; Simon Alberti
Journal:  Science       Date:  2018-01-05       Impact factor: 47.728

5.  Widespread Prion-Based Control of Growth and Differentiation Strategies in Saccharomyces cerevisiae.

Authors:  Alan K Itakura; Anupam K Chakravarty; Christopher M Jakobson; Daniel F Jarosz
Journal:  Mol Cell       Date:  2019-11-19       Impact factor: 17.970

Review 6.  The role of beta-arrestins in the termination and transduction of G-protein-coupled receptor signals.

Authors:  Louis M Luttrell; Robert J Lefkowitz
Journal:  J Cell Sci       Date:  2002-02-01       Impact factor: 5.285

7.  Computational analysis of the synergy among multiple interacting genes.

Authors:  Dimitris Anastassiou
Journal:  Mol Syst Biol       Date:  2007-02-13       Impact factor: 11.429

8.  Protein aggregates encode epigenetic memory of stressful encounters in individual Escherichia coli cells.

Authors:  Sander K Govers; Julien Mortier; Antoine Adam; Abram Aertsen
Journal:  PLoS Biol       Date:  2018-08-28       Impact factor: 8.029

9.  Multistable decision switches for flexible control of epigenetic differentiation.

Authors:  Raúl Guantes; Juan F Poyatos
Journal:  PLoS Comput Biol       Date:  2008-11-28       Impact factor: 4.475

10.  Linear models of activation cascades: analytical solutions and coarse-graining of delayed signal transduction.

Authors:  Mariano Beguerisse-Díaz; Radhika Desikan; Mauricio Barahona
Journal:  J R Soc Interface       Date:  2016-08-31       Impact factor: 4.118

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  3 in total

1.  Hysteresis in PHYTOCHROME-INTERACTING FACTOR 4 and EARLY-FLOWERING 3 dynamics dominates warm daytime memory in Arabidopsis.

Authors:  Germán Murcia; Cristina Nieto; Romina Sellaro; Salomé Prat; Jorge J Casal
Journal:  Plant Cell       Date:  2022-05-24       Impact factor: 12.085

2.  Deciphering signal transduction networks in the liver by mechanistic mathematical modelling.

Authors:  Lorenza A D'Alessandro; Ursula Klingmüller; Marcel Schilling
Journal:  Biochem J       Date:  2022-06-30       Impact factor: 3.766

Review 3.  Breadth and Specificity in Pleiotropic Protein Kinase A Activity and Environmental Responses.

Authors:  Rachel A Kocik; Audrey P Gasch
Journal:  Front Cell Dev Biol       Date:  2022-02-16
  3 in total

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