Literature DB >> 33547289

C-STABILITY an innovative modeling framework to leverage the continuous representation of organic matter.

Julien Sainte-Marie1,2, Matthieu Barrandon3, Laurent Saint-André4, Eric Gelhaye5, Francis Martin5,6, Delphine Derrien7.   

Abstract

The understanding of soil organic matter (SOM) dynamics has considerably advanced in recent years. It was previously assumed that most SOM consisted of recalcitrant compounds, whereas the emerging view considers SOM as a range of polymers continuously processed into smaller molecules by decomposer enzymes. Mainstreaming this new paradigm in current models is challenging because of their ill-adapted framework. We propose the C-STABILITY model to resolve this issue. Its innovative framework combines compartmental and continuous modeling approaches to accurately reproduce SOM cycling processes. C-STABILITY emphasizes the influence of substrate accessibility on SOM turnover and makes enzymatic and microbial biotransformations of substrate explicit. Theoretical simulations provide new insights on how depolymerization and decomposers ecology impact organic matter chemistry and amount during decomposition and at steady state. The flexible mathematical structure of C-STABILITY offers a promising foundation for exploring new mechanistic hypotheses and supporting the design of future experiments.

Entities:  

Year:  2021        PMID: 33547289      PMCID: PMC7864906          DOI: 10.1038/s41467-021-21079-6

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  35 in total

1.  The Paleozoic origin of enzymatic lignin decomposition reconstructed from 31 fungal genomes.

Authors:  Dimitrios Floudas; Manfred Binder; Robert Riley; Kerrie Barry; Robert A Blanchette; Bernard Henrissat; Angel T Martínez; Robert Otillar; Joseph W Spatafora; Jagjit S Yadav; Andrea Aerts; Isabelle Benoit; Alex Boyd; Alexis Carlson; Alex Copeland; Pedro M Coutinho; Ronald P de Vries; Patricia Ferreira; Keisha Findley; Brian Foster; Jill Gaskell; Dylan Glotzer; Paweł Górecki; Joseph Heitman; Cedar Hesse; Chiaki Hori; Kiyohiko Igarashi; Joel A Jurgens; Nathan Kallen; Phil Kersten; Annegret Kohler; Ursula Kües; T K Arun Kumar; Alan Kuo; Kurt LaButti; Luis F Larrondo; Erika Lindquist; Albee Ling; Vincent Lombard; Susan Lucas; Taina Lundell; Rachael Martin; David J McLaughlin; Ingo Morgenstern; Emanuelle Morin; Claude Murat; Laszlo G Nagy; Matt Nolan; Robin A Ohm; Aleksandrina Patyshakuliyeva; Antonis Rokas; Francisco J Ruiz-Dueñas; Grzegorz Sabat; Asaf Salamov; Masahiro Samejima; Jeremy Schmutz; Jason C Slot; Franz St John; Jan Stenlid; Hui Sun; Sheng Sun; Khajamohiddin Syed; Adrian Tsang; Ad Wiebenga; Darcy Young; Antonio Pisabarro; Daniel C Eastwood; Francis Martin; Dan Cullen; Igor V Grigoriev; David S Hibbett
Journal:  Science       Date:  2012-06-29       Impact factor: 47.728

2.  Bacterial succession on decomposing leaf litter exhibits a specific occurrence pattern of cellulolytic taxa and potential decomposers of fungal mycelia.

Authors:  Vojtěch Tláskal; Jana Voříšková; Petr Baldrian
Journal:  FEMS Microbiol Ecol       Date:  2016-08-18       Impact factor: 4.194

3.  Mineral surface-reactive metabolites secreted during fungal decomposition contribute to the formation of soil organic matter.

Authors:  Tao Wang; Zhaomo Tian; Per Bengtson; Anders Tunlid; Per Persson
Journal:  Environ Microbiol       Date:  2017-12-01       Impact factor: 5.491

4.  Transformation of Quercus petraea litter: successive changes in litter chemistry are reflected in differential enzyme activity and changes in the microbial community composition.

Authors:  Jaroslav Snajdr; Tomáš Cajthaml; Vendula Valášková; Věra Merhautová; Mirka Petránková; Peter Spetz; Kaisu Leppänen; Petr Baldrian
Journal:  FEMS Microbiol Ecol       Date:  2010-11-26       Impact factor: 4.194

5.  Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions.

Authors:  Thomas Schneider; Katharina M Keiblinger; Emanuel Schmid; Katja Sterflinger-Gleixner; Günther Ellersdorfer; Bernd Roschitzki; Andreas Richter; Leo Eberl; Sophie Zechmeister-Boltenstern; Kathrin Riedel
Journal:  ISME J       Date:  2012-03-08       Impact factor: 10.302

6.  Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls.

Authors:  Cynthia M Kallenbach; Serita D Frey; A Stuart Grandy
Journal:  Nat Commun       Date:  2016-11-28       Impact factor: 14.919

7.  Time-scale dynamics of proteome and transcriptome of the white-rot fungus Phlebia radiata: growth on spruce wood and decay effect on lignocellulose.

Authors:  Jaana Kuuskeri; Mari Häkkinen; Pia Laine; Olli-Pekka Smolander; Fitsum Tamene; Sini Miettinen; Paula Nousiainen; Marianna Kemell; Petri Auvinen; Taina Lundell
Journal:  Biotechnol Biofuels       Date:  2016-09-05       Impact factor: 6.040

8.  Gene Regulation Shifts Shed Light on Fungal Adaption in Plant Biomass Decomposers.

Authors:  Jiwei Zhang; Kevin A T Silverstein; Jesus David Castaño; Melania Figueroa; Jonathan S Schilling
Journal:  mBio       Date:  2019-11-19       Impact factor: 7.867

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