Literature DB >> 33547074

Tumor to normal single-cell mRNA comparisons reveal a pan-neuroblastoma cancer cell.

Gerda Kildisiute1, Waleed M Kholosy2, Matthew D Young3, Kenny Roberts1, Rasa Elmentaite1, Sander R van Hooff2, Clarissa N Pacyna1, Eleonora Khabirova1, Alice Piapi4, Christine Thevanesan4, Eva Bugallo-Blanco4, Christina Burke4, Lira Mamanova1, Kaylee M Keller2, Karin P S Langenberg-Ververgaert2, Philip Lijnzaad2, Thanasis Margaritis2, Frank C P Holstege2, Michelle L Tas2, Marc H W A Wijnen2, Max M van Noesel2, Ignacio Del Valle4, Giuseppe Barone5, Reinier van der Linden6, Catriona Duncan5, John Anderson4,5, John C Achermann4, Muzlifah Haniffa1,7,8, Sarah A Teichmann1, Dyanne Rampling5, Neil J Sebire5, Xiaoling He9,10, Ronald R de Krijger2,11, Roger A Barker9,10, Kerstin B Meyer1, Omer Bayraktar1, Karin Straathof12,5, Jan J Molenaar13, Sam Behjati3,14,15.   

Abstract

Neuroblastoma is a childhood cancer that resembles developmental stages of the neural crest. It is not established what developmental processes neuroblastoma cancer cells represent. Here, we sought to reveal the phenotype of neuroblastoma cancer cells by comparing cancer (n = 19,723) with normal fetal adrenal single-cell transcriptomes (n = 57,972). Our principal finding was that the neuroblastoma cancer cell resembled fetal sympathoblasts, but no other fetal adrenal cell type. The sympathoblastic state was a universal feature of neuroblastoma cells, transcending cell cluster diversity, individual patients, and clinical phenotypes. We substantiated our findings in 650 neuroblastoma bulk transcriptomes and by integrating canonical features of the neuroblastoma genome with transcriptional signals. Overall, our observations indicate that a pan-neuroblastoma cancer cell state exists, which may be attractive for novel immunotherapeutic and targeted avenues.
Copyright © 2021 The Authors, some rights reserved; exclusive licensee American Association for the Advancement of Science. No claim to original U.S. Government Works. Distributed under a Creative Commons Attribution License 4.0 (CC BY).

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Year:  2021        PMID: 33547074      PMCID: PMC7864567          DOI: 10.1126/sciadv.abd3311

Source DB:  PubMed          Journal:  Sci Adv        ISSN: 2375-2548            Impact factor:   14.136


  52 in total

1.  Comprehensive Integration of Single-Cell Data.

Authors:  Tim Stuart; Andrew Butler; Paul Hoffman; Christoph Hafemeister; Efthymia Papalexi; William M Mauck; Yuhan Hao; Marlon Stoeckius; Peter Smibert; Rahul Satija
Journal:  Cell       Date:  2019-06-06       Impact factor: 41.582

2.  CD45 and the immune response.

Authors:  J A Donovan; G A Koretzky
Journal:  J Am Soc Nephrol       Date:  1993-10       Impact factor: 10.121

3.  Scrublet: Computational Identification of Cell Doublets in Single-Cell Transcriptomic Data.

Authors:  Samuel L Wolock; Romain Lopez; Allon M Klein
Journal:  Cell Syst       Date:  2019-04-03       Impact factor: 10.304

4.  Enhanced expression of the human gene N-myc consequent to amplification of DNA may contribute to malignant progression of neuroblastoma.

Authors:  M Schwab; J Ellison; M Busch; W Rosenau; H E Varmus; J M Bishop
Journal:  Proc Natl Acad Sci U S A       Date:  1984-08       Impact factor: 11.205

5.  Activated expression of the N-myc gene in human neuroblastomas and related tumors.

Authors:  N E Kohl; C E Gee; F W Alt
Journal:  Science       Date:  1984-12-14       Impact factor: 47.728

6.  Integrating single-cell transcriptomic data across different conditions, technologies, and species.

Authors:  Andrew Butler; Paul Hoffman; Peter Smibert; Efthymia Papalexi; Rahul Satija
Journal:  Nat Biotechnol       Date:  2018-04-02       Impact factor: 54.908

7.  Single-cell mRNA quantification and differential analysis with Census.

Authors:  Xiaojie Qiu; Andrew Hill; Jonathan Packer; Dejun Lin; Yi-An Ma; Cole Trapnell
Journal:  Nat Methods       Date:  2017-01-23       Impact factor: 28.547

8.  Schwann Cell Precursors from Human Pluripotent Stem Cells as a Potential Therapeutic Target for Myelin Repair.

Authors:  Han-Seop Kim; Jungwoon Lee; Da Yong Lee; Young-Dae Kim; Jae Yun Kim; Hyung Jin Lim; Sungmin Lim; Yee Sook Cho
Journal:  Stem Cell Reports       Date:  2017-05-11       Impact factor: 7.765

9.  The genetic landscape of high-risk neuroblastoma.

Authors:  Trevor J Pugh; Olena Morozova; Edward F Attiyeh; Shahab Asgharzadeh; Jun S Wei; Daniel Auclair; Scott L Carter; Kristian Cibulskis; Megan Hanna; Adam Kiezun; Jaegil Kim; Michael S Lawrence; Lee Lichenstein; Aaron McKenna; Chandra Sekhar Pedamallu; Alex H Ramos; Erica Shefler; Andrey Sivachenko; Carrie Sougnez; Chip Stewart; Adrian Ally; Inanc Birol; Readman Chiu; Richard D Corbett; Martin Hirst; Shaun D Jackman; Baljit Kamoh; Alireza Hadj Khodabakshi; Martin Krzywinski; Allan Lo; Richard A Moore; Karen L Mungall; Jenny Qian; Angela Tam; Nina Thiessen; Yongjun Zhao; Kristina A Cole; Maura Diamond; Sharon J Diskin; Yael P Mosse; Andrew C Wood; Lingyun Ji; Richard Sposto; Thomas Badgett; Wendy B London; Yvonne Moyer; Julie M Gastier-Foster; Malcolm A Smith; Jaime M Guidry Auvil; Daniela S Gerhard; Michael D Hogarty; Steven J M Jones; Eric S Lander; Stacey B Gabriel; Gad Getz; Robert C Seeger; Javed Khan; Marco A Marra; Matthew Meyerson; John M Maris
Journal:  Nat Genet       Date:  2013-01-20       Impact factor: 38.330

10.  Genetic effects on gene expression across human tissues.

Authors:  Alexis Battle; Christopher D Brown; Barbara E Engelhardt; Stephen B Montgomery
Journal:  Nature       Date:  2017-10-11       Impact factor: 49.962

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  20 in total

1.  Serotonin limits generation of chromaffin cells during adrenal organ development.

Authors:  Polina Kameneva; Victoria I Melnikova; Maria Eleni Kastriti; Anastasia Kurtova; Emil Kryukov; Aliia Murtazina; Louis Faure; Irina Poverennaya; Artem V Artemov; Tatiana S Kalinina; Nikita V Kudryashov; Michael Bader; Jan Skoda; Petr Chlapek; Lucie Curylova; Lukas Sourada; Jakub Neradil; Marketa Tesarova; Massimo Pasqualetti; Patricia Gaspar; Vasily D Yakushov; Boris I Sheftel; Tomas Zikmund; Jozef Kaiser; Kaj Fried; Natalia Alenina; Elena E Voronezhskaya; Igor Adameyko
Journal:  Nat Commun       Date:  2022-05-25       Impact factor: 17.694

Review 2.  Advancing therapy for neuroblastoma.

Authors:  Bo Qiu; Katherine K Matthay
Journal:  Nat Rev Clin Oncol       Date:  2022-05-25       Impact factor: 65.011

3.  BET and CDK Inhibition Reveal Differences in the Proliferation Control of Sympathetic Ganglion Neuroblasts and Adrenal Chromaffin Cells.

Authors:  Jessica Sriha; Caroline Louis-Brennetot; Cécile Pierre-Eugène; Sylvain Baulande; Virginie Raynal; Amira Kramdi; Igor Adameyko; Uwe Ernsberger; Thomas Deller; Olivier Delattre; Isabelle Janoueix-Lerosey; Hermann Rohrer
Journal:  Cancers (Basel)       Date:  2022-06-01       Impact factor: 6.575

4.  The need for a standard for informed consent for collection of human fetal material.

Authors:  Roger A Barker; Gerard J Boer; Elena Cattaneo; R Alta Charo; Susana M Chuva de Sousa Lopes; Yali Cong; Misao Fujita; Steven Goldman; Göran Hermerén; Insoo Hyun; Steven Lisgo; Anne E Rosser; Eric Anthony; Olle Lindvall
Journal:  Stem Cell Reports       Date:  2022-06-14       Impact factor: 7.294

5.  Expression and activation of nuclear hormone receptors result in neuronal differentiation and favorable prognosis in neuroblastoma.

Authors:  Muhammad Mushtaq; Judit Liaño-Pons; Lourdes Sainero-Alcolado; Aida Rodriguez-Garcia; Ye Yuan; Tong Liu; María Victoria Ruiz-Pérez; Susanne Schlisio; Oscar Bedoya-Reina; Marie Arsenian-Henriksson
Journal:  J Exp Clin Cancer Res       Date:  2022-07-19

6.  Reciprocal impacts of telomerase activity and ADRN/MES differentiation state in neuroblastoma tumor biology.

Authors:  Eun Young Yu; Syed S Zahid; Sarah Aloe; Erik Falck-Pedersen; Xi Kathy Zhou; Nai-Kong V Cheung; Neal F Lue
Journal:  Commun Biol       Date:  2021-11-19

Review 7.  Bone Marrow Environment in Metastatic Neuroblastoma.

Authors:  Chiara Brignole; Fabio Pastorino; Patrizia Perri; Loredana Amoroso; Veronica Bensa; Enzo Calarco; Mirco Ponzoni; Maria Valeria Corrias
Journal:  Cancers (Basel)       Date:  2021-05-19       Impact factor: 6.639

Review 8.  Future Match Making: When Pediatric Oncology Meets Organoid Technology.

Authors:  Virginie Barbet; Laura Broutier
Journal:  Front Cell Dev Biol       Date:  2021-07-13

9.  Landscape of Bone Marrow Metastasis in Human Neuroblastoma Unraveled by Transcriptomics and Deep Multiplex Imaging.

Authors:  Daria Lazic; Florian Kromp; Fikret Rifatbegovic; Peter Repiscak; Michael Kirr; Filip Mivalt; Florian Halbritter; Marie Bernkopf; Andrea Bileck; Marek Ussowicz; Inge M Ambros; Peter F Ambros; Christopher Gerner; Ruth Ladenstein; Christian Ostalecki; Sabine Taschner-Mandl
Journal:  Cancers (Basel)       Date:  2021-08-26       Impact factor: 6.639

10.  Single cell derived mRNA signals across human kidney tumors.

Authors:  Matthew D Young; Thomas J Mitchell; Lars Custers; Thanasis Margaritis; Francisco Morales-Rodriguez; Kwasi Kwakwa; Eleonora Khabirova; Gerda Kildisiute; Thomas R W Oliver; Ronald R de Krijger; Marry M van den Heuvel-Eibrink; Federico Comitani; Alice Piapi; Eva Bugallo-Blanco; Christine Thevanesan; Christina Burke; Elena Prigmore; Kirsty Ambridge; Kenny Roberts; Felipe A Vieira Braga; Tim H H Coorens; Ignacio Del Valle; Anna Wilbrey-Clark; Lira Mamanova; Grant D Stewart; Vincent J Gnanapragasam; Dyanne Rampling; Neil Sebire; Nicholas Coleman; Liz Hook; Anne Warren; Muzlifah Haniffa; Marcel Kool; Stefan M Pfister; John C Achermann; Xiaoling He; Roger A Barker; Adam Shlien; Omer A Bayraktar; Sarah A Teichmann; Frank C Holstege; Kerstin B Meyer; Jarno Drost; Karin Straathof; Sam Behjati
Journal:  Nat Commun       Date:  2021-06-23       Impact factor: 14.919

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