Literature DB >> 33541860

Clinical and Biological Subtypes of B-cell Lymphoma Revealed by Microenvironmental Signatures.

Nikita Kotlov1, Alexander Bagaev1, Maria V Revuelta2, Jude M Phillip2, Maria Teresa Cacciapuoti3, Zoya Antysheva1, Viktor Svekolkin1, Ekaterina Tikhonova1, Natalia Miheecheva1, Natalia Kuzkina1, Grigorii Nos1, Fabrizio Tabbo3, Felix Frenkel1, Paola Ghione2,4, Maria Tsiper1, Nava Almog1, Nathan Fowler1, Ari M Melnick2, John P Leonard2, Giorgio Inghirami3, Leandro Cerchietti5.   

Abstract

Diffuse large B-cell lymphoma (DLBCL) is a biologically and clinically heterogeneous disease. Transcriptomic and genetic characterization of DLBCL has increased the understanding of its intrinsic pathogenesis and provided potential therapeutic targets. However, the role of the microenvironment in DLBCL biology remains less understood. Here, we performed a transcriptomic analysis of the microenvironment of 4,655 DLBCLs from multiple independent cohorts and described four major lymphoma microenvironment categories that associate with distinct biological aberrations and clinical behavior. We also found evidence of genetic and epigenetic mechanisms deployed by cancer cells to evade microenvironmental constraints of lymphoma growth, supporting the rationale for implementing DNA hypomethylating agents in selected patients with DLBCL. In addition, our work uncovered new therapeutic vulnerabilities in the biochemical composition of the extracellular matrix that were exploited to decrease DLBCL proliferation in preclinical models. This novel classification provides a road map for the biological characterization and therapeutic exploitation of the DLBCL microenvironment. SIGNIFICANCE: In a translational relevant transcriptomic-based classification, we characterized the microenvironment as a critical component of the B-cell lymphoma biology and associated it with the DLBCL clinical behavior establishing a novel opportunity for targeting therapies.This article is highlighted in the In This Issue feature, p. 1307. ©2021 American Association for Cancer Research.

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Year:  2021        PMID: 33541860      PMCID: PMC8178179          DOI: 10.1158/2159-8290.CD-20-0839

Source DB:  PubMed          Journal:  Cancer Discov        ISSN: 2159-8274            Impact factor:   39.397


  81 in total

1.  A gene expression-based method to diagnose clinically distinct subgroups of diffuse large B cell lymphoma.

Authors:  George Wright; Bruce Tan; Andreas Rosenwald; Elaine H Hurt; Adrian Wiestner; Louis M Staudt
Journal:  Proc Natl Acad Sci U S A       Date:  2003-08-04       Impact factor: 11.205

2.  A genome-wide transcriptomic analysis of protein-coding genes in human blood cells.

Authors:  Mathias Uhlen; Max J Karlsson; Wen Zhong; Abdellah Tebani; Christian Pou; Jaromir Mikes; Tadepally Lakshmikanth; Björn Forsström; Fredrik Edfors; Jacob Odeberg; Adil Mardinoglu; Cheng Zhang; Kalle von Feilitzen; Jan Mulder; Evelina Sjöstedt; Andreas Hober; Per Oksvold; Martin Zwahlen; Fredrik Ponten; Cecilia Lindskog; Åsa Sivertsson; Linn Fagerberg; Petter Brodin
Journal:  Science       Date:  2019-12-20       Impact factor: 47.728

3.  Therapeutic implication of concomitant chromosomal aberrations in patients with aggressive B-cell lymphomas.

Authors:  Rossella Marullo; Sarah C Rutherford; John P Leonard; Leandro Cerchietti
Journal:  Cell Cycle       Date:  2016-07-15       Impact factor: 4.534

Review 4.  TGF-beta in CAF-mediated tumor growth and metastasis.

Authors:  A Calon; D V F Tauriello; E Batlle
Journal:  Semin Cancer Biol       Date:  2014-01-07       Impact factor: 15.707

5.  Toil enables reproducible, open source, big biomedical data analyses.

Authors:  John Vivian; Arjun Arkal Rao; Frank Austin Nothaft; Christopher Ketchum; Joel Armstrong; Adam Novak; Jacob Pfeil; Jake Narkizian; Alden D Deran; Audrey Musselman-Brown; Hannes Schmidt; Peter Amstutz; Brian Craft; Mary Goldman; Kate Rosenbloom; Melissa Cline; Brian O'Connor; Megan Hanna; Chet Birger; W James Kent; David A Patterson; Anthony D Joseph; Jingchun Zhu; Sasha Zaranek; Gad Getz; David Haussler; Benedict Paten
Journal:  Nat Biotechnol       Date:  2017-04-11       Impact factor: 54.908

6.  TNF-α expression in tumor cells as a novel prognostic marker for diffuse large B-cell lymphoma, not otherwise specified.

Authors:  Shoko Nakayama; Taiji Yokote; Yuji Hirata; Toshikazu Akioka; Takuji Miyoshi; Nobuya Hiraoka; Kazuki Iwaki; Ayami Takayama; Uta Nishiwaki; Yuki Masuda; Yasuichiro Nishimura; Motomu Tsuji; Toshiaki Hanafusa
Journal:  Am J Surg Pathol       Date:  2014-02       Impact factor: 6.394

7.  Biglycan-mediated upregulation of MHC class I expression in HER-2/neu-transformed cells.

Authors:  Karthikeyan Subbarayan; Sandra Leisz; Claudia Wickenhauser; Daniel Bethmann; Chiara Massa; André Steven; Barbara Seliger
Journal:  Oncoimmunology       Date:  2018-01-16       Impact factor: 8.110

8.  Perturbation-response genes reveal signaling footprints in cancer gene expression.

Authors:  Michael Schubert; Bertram Klinger; Martina Klünemann; Anja Sieber; Florian Uhlitz; Sascha Sauer; Mathew J Garnett; Nils Blüthgen; Julio Saez-Rodriguez
Journal:  Nat Commun       Date:  2018-01-02       Impact factor: 14.919

9.  Ensembl 2018.

Authors:  Daniel R Zerbino; Premanand Achuthan; Wasiu Akanni; M Ridwan Amode; Daniel Barrell; Jyothish Bhai; Konstantinos Billis; Carla Cummins; Astrid Gall; Carlos García Girón; Laurent Gil; Leo Gordon; Leanne Haggerty; Erin Haskell; Thibaut Hourlier; Osagie G Izuogu; Sophie H Janacek; Thomas Juettemann; Jimmy Kiang To; Matthew R Laird; Ilias Lavidas; Zhicheng Liu; Jane E Loveland; Thomas Maurel; William McLaren; Benjamin Moore; Jonathan Mudge; Daniel N Murphy; Victoria Newman; Michael Nuhn; Denye Ogeh; Chuang Kee Ong; Anne Parker; Mateus Patricio; Harpreet Singh Riat; Helen Schuilenburg; Dan Sheppard; Helen Sparrow; Kieron Taylor; Anja Thormann; Alessandro Vullo; Brandon Walts; Amonida Zadissa; Adam Frankish; Sarah E Hunt; Myrto Kostadima; Nicholas Langridge; Fergal J Martin; Matthieu Muffato; Emily Perry; Magali Ruffier; Dan M Staines; Stephen J Trevanion; Bronwen L Aken; Fiona Cunningham; Andrew Yates; Paul Flicek
Journal:  Nucleic Acids Res       Date:  2018-01-04       Impact factor: 16.971

Review 10.  Hide or defend, the two strategies of lymphoma immune evasion: potential implications for immunotherapy.

Authors:  Marie de Charette; Roch Houot
Journal:  Haematologica       Date:  2018-07-13       Impact factor: 9.941

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  28 in total

1.  Tee-ing up a New Follicular Lymphoma Classification System.

Authors:  Ari M Melnick
Journal:  Blood Cancer Discov       Date:  2022-09-06

2.  Single-Cell RNA-Seq and Bulk RNA-Seq Reveal Intratumoral Heterogeneity and Tumor Microenvironment Characteristics in Diffuse Large B-Cell Lymphoma.

Authors:  Yang Zhao; Hui Xu; Mingzhi Zhang; Ling Li
Journal:  Front Genet       Date:  2022-05-04       Impact factor: 4.772

3.  Tyramide-conjugated DNA barcodes enable signal amplification for multiparametric CODEX imaging.

Authors:  Paul D Simonson; Itzel Valencia; Sanjay S Patel
Journal:  Commun Biol       Date:  2022-06-27

4.  Genetic Subtyping and Phenotypic Characterization of the Immune Microenvironment and MYC/BCL2 Double Expression Reveal Heterogeneity in Diffuse Large B-cell Lymphoma.

Authors:  Zijun Y Xu-Monette; Li Wei; Xiaosheng Fang; Qingyan Au; Harry Nunns; Hua You; Máté Nagy; Alexandar Tzankov; Feng Zhu; Carlo Visco; Govind Bhagat; Karen Dybkaer; April Chiu; Wayne Tam; Youli Zu; Eric D Hsi; Fredrick B Hagemeister; Xiaoping Sun; Xin Han; Heounjeong Go; Maurilio Ponzoni; Andrés J M Ferreri; Michael B Møller; Benjamin M Parsons; J Han van Krieken; Miguel A Piris; Jane N Winter; Yong Li; Bing Xu; Maher Albitar; Ken H Young
Journal:  Clin Cancer Res       Date:  2022-03-01       Impact factor: 13.801

5.  The landscape of tumor cell states and ecosystems in diffuse large B cell lymphoma.

Authors:  Chloé B Steen; Bogdan A Luca; Mohammad S Esfahani; Armon Azizi; Brian J Sworder; Barzin Y Nabet; David M Kurtz; Chih Long Liu; Farnaz Khameneh; Ranjana H Advani; Yasodha Natkunam; June H Myklebust; Maximilian Diehn; Andrew J Gentles; Aaron M Newman; Ash A Alizadeh
Journal:  Cancer Cell       Date:  2021-09-30       Impact factor: 38.585

Review 6.  Prognostic molecular biomarkers in diffuse large B-cell lymphoma in the rituximab era and their therapeutic implications.

Authors:  Sotirios G Papageorgiou; Thomas P Thomopoulos; Ioannis Katagas; Anthi Bouchla; Vassiliki Pappa
Journal:  Ther Adv Hematol       Date:  2021-05-24

Review 7.  Epigenetic, Metabolic, and Immune Crosstalk in Germinal-Center-Derived B-Cell Lymphomas: Unveiling New Vulnerabilities for Rational Combination Therapies.

Authors:  Inna Serganova; Sanjukta Chakraborty; Samuel Yamshon; Yusuke Isshiki; Ryan Bucktrout; Ari Melnick; Wendy Béguelin; Roberta Zappasodi
Journal:  Front Cell Dev Biol       Date:  2022-01-07

8.  International Prognostic Index-Based Immune Prognostic Model for Diffuse Large B-Cell Lymphoma.

Authors:  Shidai Mu; Deyao Shi; Lisha Ai; Fengjuan Fan; Fei Peng; Chunyan Sun; Yu Hu
Journal:  Front Immunol       Date:  2021-10-22       Impact factor: 7.561

Review 9.  Predictive and Prognostic Molecular Factors in Diffuse Large B-Cell Lymphomas.

Authors:  Stefano A Pileri; Claudio Tripodo; Federica Melle; Giovanna Motta; Valentina Tabanelli; Stefano Fiori; Maria Carmela Vegliante; Saveria Mazzara; Sabino Ciavarella; Enrico Derenzini
Journal:  Cells       Date:  2021-03-18       Impact factor: 6.600

Review 10.  Human B Lymphomas Reveal Their Secrets Through Genetic Mouse Models.

Authors:  Noushin Mossadegh-Keller; Gabriel Brisou; Alicia Beyou; Bertrand Nadel; Sandrine Roulland
Journal:  Front Immunol       Date:  2021-07-16       Impact factor: 7.561

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