Literature DB >> 33529234

Semi-Siamese U-Net for separation of lung and heart bioimpedance images: A simulation study of thorax EIT.

Yen-Fen Ko1, Kuo-Sheng Cheng1.   

Abstract

Electrical impedance tomography (EIT) is widely used for bedside monitoring of lung ventilation status. Its goal is to reflect the internal conductivity changes and estimate the electrical properties of the tissues in the thorax. However, poor spatial resolution affects EIT image reconstruction to the extent that the heart and lung-related impedance images are barely distinguishable. Several studies have attempted to tackle this problem, and approaches based on decomposition of EIT images using linear transformations have been developed, and recently, U-Net has become a prominent architecture for semantic segmentation. In this paper, we propose a novel semi-Siamese U-Net specifically tailored for EIT application. It is based on the state-of-the-art U-Net, whose structure is modified and extended, forming shared encoder with parallel decoders and has multi-task weighted losses added to adapt to the individual separation tasks. The trained semi-Siamese U-Net model was evaluated with a test dataset, and the results were compared with those of the classical U-Net in terms of Dice similarity coefficient and mean absolute error. Results showed that compared with the classical U-Net, semi-Siamese U-Net exhibited performance improvements of 11.37% and 3.2% in Dice similarity coefficient, and 3.16% and 5.54% in mean absolute error, in terms of heart and lung-impedance image separation, respectively.

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Year:  2021        PMID: 33529234      PMCID: PMC7853495          DOI: 10.1371/journal.pone.0246071

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


  24 in total

1.  Time series of EIT chest images using singular value decomposition and Fourier transform.

Authors:  N Kerrouche; C N McLeod; W R Lionheart
Journal:  Physiol Meas       Date:  2001-02       Impact factor: 2.833

Review 2.  Whither lung EIT: where are we, where do we want to go and what do we need to get there?

Authors:  Andy Adler; Marcelo B Amato; John H Arnold; Richard Bayford; Marc Bodenstein; Stephan H Böhm; Brian H Brown; Inéz Frerichs; Ola Stenqvist; Norbert Weiler; Gerhard K Wolf
Journal:  Physiol Meas       Date:  2012-04-24       Impact factor: 2.833

3.  Uses and abuses of EIDORS: an extensible software base for EIT.

Authors:  Andy Adler; William R B Lionheart
Journal:  Physiol Meas       Date:  2006-04-18       Impact factor: 2.833

4.  In vivo imaging of cardiac related impedance changes.

Authors:  B M Eyuboglu; B H Brown; D C Barber
Journal:  IEEE Eng Med Biol Mag       Date:  1989

5.  GREIT: a unified approach to 2D linear EIT reconstruction of lung images.

Authors:  Andy Adler; John H Arnold; Richard Bayford; Andrea Borsic; Brian Brown; Paul Dixon; Theo J C Faes; Inéz Frerichs; Hervé Gagnon; Yvo Gärber; Bartłomiej Grychtol; Günter Hahn; William R B Lionheart; Anjum Malik; Robert P Patterson; Janet Stocks; Andrew Tizzard; Norbert Weiler; Gerhard K Wolf
Journal:  Physiol Meas       Date:  2009-06-02       Impact factor: 2.833

6.  Assessment of the pulmonary volume pulse in idiopathic pulmonary arterial hypertension by means of electrical impedance tomography.

Authors:  Henk J Smit; Anton Vonk-Noordegraaf; Anco Boonstra; Peter M de Vries; Pieter E Postmus
Journal:  Respiration       Date:  2005-09-30       Impact factor: 3.580

7.  An assessment of dynamic images by applied potential tomography for monitoring pulmonary perfusion.

Authors:  F J McArdle; A J Suggett; B H Brown; D C Barber
Journal:  Clin Phys Physiol Meas       Date:  1988

8.  Microarray analysis of regional cellular responses to local mechanical stress in acute lung injury.

Authors:  Brett A Simon; R Blaine Easley; Dmitry N Grigoryev; Shwu-Fan Ma; Shui Q Ye; Tera Lavoie; Rubin M Tuder; Joe G N Garcia
Journal:  Am J Physiol Lung Cell Mol Physiol       Date:  2006-06-16       Impact factor: 5.464

9.  Regional distribution of blood volume within the preterm infant thorax during synchronised mechanical ventilation.

Authors:  Hazel R Carlisle; Ruth K Armstrong; Peter G Davis; Andreas Schibler; Inéz Frerichs; David G Tingay
Journal:  Intensive Care Med       Date:  2010-09-21       Impact factor: 17.440

10.  A novel post-processing scheme for two-dimensional electrical impedance tomography based on artificial neural networks.

Authors:  Sébastien Martin; Charles T M Choi
Journal:  PLoS One       Date:  2017-12-05       Impact factor: 3.240

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  1 in total

1.  A Novel Automatic Quantification Protocol for Biomarkers of Tauopathies in the Hippocampus and Entorhinal Cortex of Post-Mortem Samples Using an Extended Semi-Siamese U-Net.

Authors:  Luis A Campero-Garcia; Jose A Cantoral-Ceballos; Alejandra Martinez-Maldonado; Jose Luna-Muñoz; Miguel A Ontiveros-Torres; Andres E Gutierrez-Rodriguez
Journal:  Biology (Basel)       Date:  2022-07-28
  1 in total

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