| Literature DB >> 33527474 |
Ibrahim Halil Tanboğa1,2, Uğur Canpolat3, Elif Hande Özcan Çetin4, Harun Kundi4, Osman Çelik5, Murat Çağlayan5, Naim Ata5, Özcan Özeke6, Serkan Çay6, Cihangir Kaymaz7, Serkan Topaloğlu6.
Abstract
In the current study, we aimed to develop and validate a model, based on our nationwide centralized coronavirus disease 2019 (COVID-19) database for predicting death. We conducted an observational study (CORONATION-TR registry). All patients hospitalized with COVID-19 in Turkey between March 11 and June 22, 2020 were included. We developed the model and validated both temporal and geographical models. Model performances were assessed by area under the curve-receiver operating characteristic (AUC-ROC or c-index), R2 , and calibration plots. The study population comprised a total of 60,980 hospitalized COVID-19 patients. Of these patients, 7688 (13%) were transferred to intensive care unit, 4867 patients (8.0%) required mechanical ventilation, and 2682 patients (4.0%) died. Advanced age, increased levels of lactate dehydrogenase, C-reactive protein, neutrophil-lymphocyte ratio, creatinine, albumine, and D-dimer levels, and pneumonia on computed tomography, diabetes mellitus, and heart failure status at admission were found to be the strongest predictors of death at 30 days in the multivariable logistic regression model (area under the curve-receiver operating characteristic = 0.942; 95% confidence interval: 0.939-0.945; R2 = .457). There were also favorable temporal and geographic validations. We developed and validated the prediction model to identify in-hospital deaths in all hospitalized COVID-19 patients. Our model achieved reasonable performances in both temporal and geographic validations.Entities:
Keywords: COVID-19; mortality; prediction models; prognosis
Mesh:
Year: 2021 PMID: 33527474 PMCID: PMC8014660 DOI: 10.1002/jmv.26844
Source DB: PubMed Journal: J Med Virol ISSN: 0146-6615 Impact factor: 20.693
Baseline characteristics of all patients
| All patients | ICU patients | MV | 30‐Day death | |
|---|---|---|---|---|
| Variables | ( | ( | ( | ( |
| Age, years | 49 (36–63) | 65 (52–76) | 66 (54–76) | 70 (61–79) |
| Sex, male % | 53% (32,303) | 60% (4590) | 60% (2940) | 61% (1643) |
| NLR | 2.30 (1.46–3.81) | 3.63 (2.05–6.80) | 4.02 (2.20–7.71) | 4.95 (2.69–9.48) |
| D‐Dimer, μg/ml | 0.40 (0.22–0.80) | 0.84 (0.40–1.95) | 0.92 (0.43–2.26) | 1.19 (0.57–2.94) |
| LDH, U/L | 225 (184–297) | 323 (235–456) | 350 (248–492) | 410 (298–564) |
| CRP, mg/dl | 6.81 (1.46–27.7) | 41.4 (9.43–121) | 58.7 (12.5–141) | 95.0 (25.3–174) |
| Hemoglobin, g/dl | 13.6 (12.4–14.8) | 12.9 (11.4–14.2) | 12.7 (11.3–14.0) | 12.4 (10.9–13.8) |
| Platelet counts, ×109/L | 208 (169–256) | 197 (155–252) | 195 (153–250) | 187 (147–245) |
| Creatinine, mg/dl | 0.82 (0.69–0.98) | 0.93 (0.77–1.20) | 0.96 (0.78–1.26) | 1.06 (0.84–1.47) |
| Albumin, g/dl | 4.1 (3.7–4.4) | 3.4 (3.0–3.9) | 3.4 (2.9–3.8) | 3.2 (2.8–3.5) |
| CAD, % | 15% (9339) | 32% (2452) | 33% (1597) | 39% (1057) |
| PAD, % | 4.0% (2217) | 7.0% (574) | 8.0% (369) | 9.0% (237) |
| CTD, % | 3.0% (1857) | 4.0% (291) | 4.0% (198) | 4.0% (118) |
| Malignancy, % | 3.0% (1919) | 6.0% (488) | 7.0% (341) | 9.0% (243) |
| Lymphoma, % | 0.1% (227) | 1.0% (71) | 1.0% (45) | 1.0% (27) |
| Heart failure, % | 5.0% (3004) | 15% (1167) | 16% (773) | 21% (563) |
| COPD, % | 21% (12,581) | 33% (2511) | 33% (1587) | 37% (979) |
| Cerebrovascular disease, % | 7.0% (4059) | 16% (1224) | 17% (810) | 20% (548) |
| Hypertension, % | 37% (22,386) | 62% (4768) | 64% (3126) | 74% (1972) |
| DM, % | 19% (11,863) | 32% (2495) | 34% (1646) | 39% (1036) |
| CKD, % | 3.0% (2096) | 10% (763) | 10% (511) | 14% (384) |
| Healthcare worker, % | 6.0% (3557) | 3.0% (194) | 2.0% (103) | 1.0% (15) |
| Pneumonia on CT, % | 60% (36,778) | 81% (6257) | 83% (4035) | 85% (2268) |
| Dyspnea, % | 37% (22,584) | 33% (2518) | 32% (1564) | 30% (809) |
| Fever, % | 38% (23,083) | 33% (2570) | 33% (1602) | 31% (827) |
| Valvular heart disease, % | 1.0% (690) | 2.0% (161) | 2.0% (103) | 3.0% (72) |
| Cardiac arrhythmias, % | 7.0% (3980) | 14% (1104) | 15% (732) | 19% (499) |
| Chronic liver disease, % | 3.0% (1637) | 4.0% (281) | 4.0% (201) | 5.0% (121) |
| Pregnancy, % | 1.0% (440) | 0.1% (16) | 0.2% (11) | 0.05% (1) |
| In‐hospital treatments, % | ||||
| Favipiravir | 23% (14,185) | 63% (4852) | 65% (3167) | 72% (1929) |
| HCQ | 84% (51,167) | 84% (6495) | 84% (4070) | 81% (2169) |
| Lopinavir/ritonavir | 3.0% (1936) | 12% (892) | 15% (744) | 16% (439) |
| Oseltamivir | 49% (30,138) | 58% (4476) | 60% (2925) | 60% (1608) |
| High dose C‐vitamin | 61% (36,973) | 65% (5031) | 40% (1945) | 44% (1173) |
| Azithromycin | 16% (9598) | 37% (2820) | 65% (3175) | 63% (1766) |
Abbreviations: CAD, coronary artery disease; CKD, chronic kidney disease, COPD, chronic obstructive pulmonary disease; CRP, C‐reactive protein; CT, computed tomography; CTD, collagen tissue disorders; DM, diabetes mellitus; HCQ; hydroxychloroquine; ICU; intensive care unit; LDH, lactate dehydrogenase; MV, mechanical ventilation, NLR, neutrophil–lymphocyte ratio; PAD, peripheral artery disease.
Baseline characteristics of hospitalized patients in the early and late period
| Early period | Late period | |
|---|---|---|
| Variables | ( | ( |
| Age, years | 52 (39–64) | 44 (31–57) |
| Sex, male % | 53% (21,815) | 53% (10,488) |
| NLR | 2.43 (1.53–4.03) | 2.10 (1.35–3.38) |
| D‐Dimer, μg/ml | 0.44 (0.23–0.89) | 0.34 (0.19–0.66) |
| LDH, U/L | 232 (187–309) | 214 (178–272) |
| CRP, mg/dl | 9.00 (1.91–36.5) | 3.92 (0.90–14.7) |
| Hemoglobin, g/dl | 13.5 (12.3–14.7) | 13.8(12.6–15.1) |
| Platelet counts, ×109/L | 207 (167–256) | 211 (172–255) |
| Creatinine, mg/dl | 0.82 (0.69–0.99) | 0.82 (0.69–0.97) |
| Albumin, g/dl | 4.0 (3.6–4.4) | 4.2 (3.8–4.5) |
| CAD, % | 17% (7031) | 12% (2308) |
| PAD, % | 4.0% (1687) | 3.0% (530) |
| CTD, % | 3.0% (1320) | 3.0% (537) |
| Malignancy, % | 3.0% (1420) | 3.0% (499) |
| Lymphoma, % | 0.1% (171) | 0.1% (56) |
| Heart failure, % | 6.0% (2288) | 4.0% (716) |
| COPD, % | 22% (9222) | 17% (3359) |
| Cerebrovascular disease, % | 7.0% (3074) | 5.0% (985) |
| Hypertension, % | 41% (16,741) | 29% (5645) |
| DM, % | 21% (8818) | 15% (3045) |
| CKD, % | 4.0% (1616) | 2.0% (480) |
| Healthcare worker, % | 6.0% (2366) | 6.0% (1191) |
| Pneumonia on CT, % | 66% (27,112) | 49% (9666) |
| Dyspnea, % | 36% (14,799) | 40% (7785) |
| Fever, % | 37% (15,184) | 40% (7899) |
| Valvular heart disease, % | 1.0% (495) | 1.0% (195) |
| Cardiac arrhythmias, % | 7.0% (3034) | 5.0% (946) |
| Chronic liver disease, % | 3.0% (1175) | 2.0% (462) |
| Pregnancy, % | 1.0% (295) | 1.0% (145) |
| In‐hospital treatments, % | ||
| Favipiravir | 24% (10,091) | 21% (4094) |
| HCQ | 85% (35,020) | 82% (16,147) |
| Lopinavir/ritonavir | 4.0% (1823) | 1.0% (113) |
| Oseltamivir | 61% (24,996) | 26% (5142) |
| High dose C‐vitamin | 64% (26,451) | 53% (10,522) |
| Azithromycin | 18% (7471) | 11% (2127) |
| 30‐Day death, % | 6.0% (2343) | 2.0% (339) |
| Transferred to ICU, % | 15% (6160) | 8% (1528) |
| Mechanical ventilation, % | 10% (4158) | 4.0% (709) |
| Length of hospital stay, days | 8 (5–12) | 8 (5–12) |
Abbreviations: CAD, coronary artery disease; CKD, chronic kidney disease, COPD, chronic obstructive pulmonary disease; CRP, C‐reactive protein; CT, computed tomography; CTD, collagen tissue disorders; DM, diabetes mellitus; HCQ; hydroxychloroquine; ICU; intensive care unit; LDH, lactate dehydrogenase; MV, mechanical ventilation, NLR, neutrophil–lymphocyte ratio; PAD, peripheral artery disease.
Multivariable logistic regression models for 30‐day death
| Full model | Simple model | |
|---|---|---|
| Variables | Odds ratio, and 95% CI | Odds ratio, and 95% CI |
| Age, year | 4.24 (3.37–5.34) | 4.29 (3.44–5.36) |
| Sex, male | 0.96 (0.86–1.07) | – |
| NLR | 1.39 (1.27–1.51) | 1.38 (1.27–1.50) |
| D‐Dimer, μg/ml | 1.14 (1.05–1.24) | 1.14 (1.05–1.24) |
| LDH, U/L | 2.72 (2.44–3.03) | 2.72 (2.44–3.03) |
| CRP, mg/dl | 1.67 (1.51–1.85) | 1.67 (1.51–1.84) |
| Hemoglobin, g/dl | 1.03 (0.90–1.18) | 1.01 (0.89–1.15) |
| Platelet counts, ×109/L | 0.66 (0.59–0.74) | 0.66 (0.59–0.75) |
| Creatinine, mg/dl | 1.64 (1.41–1.90) | 1.61 (1.39–1.86) |
| Albumin, g/dl | 0.34 (0.26–0.45) | 0.34 (0.26–0.45) |
| Pneumonia on CT | 1.52 (1.34–1.72) | 1.51 (1.33–1.71) |
| Coronary artery disease, yes | 0.94 (0.84–1.06) | – |
| Peripheral artery disease, yes | 0.85 (0.71–1.01) | – |
| Collagen tissue disorders, yes | 1.08 (0.86–1.36) | – |
| Malignancy, yes | 1.02 (0.85–1.21) | – |
| Lymphoma, yes | 1.08 (0.67–1.75) | – |
| Heart failure, yes | 1.27 (1.11–1.46) | 1.28 (1.12–1.45) |
| COPD, yes | 1.06 (0.95–1.17) | – |
| Cerebrovascular disease, yes | 1.18 (1.04–1.34) | – |
| Hypertension, yes | 1.00 (0.88–1.14) | – |
| Diabetes mellitus, yes | 1.23 (1.11–1.36) | 1.23 (1.11–1.36) |
| Valvular heart disease, yes | 1.12 (0.82–1.52) | – |
| Chronic liver disease, yes | 1.24 (0.98–1.57) | – |
Abbreviations: COPD, chronic obstructive pulmonary disease; CRP, C‐reactive protein; LDH, lactate dehydrogenase; NLR, neutrophil–lymphocyte ratio.
Figure 1Odds ratio (95% CI) plots for the effects of continuous predictors on the outcome. CI, confidence interval
Figure 2Calibration plot for overall cohorts
Model performances for overall apparent, temporal, and geographic validations
| Apparent | Temporal splitting | Geographical splitting | |||
|---|---|---|---|---|---|
| All patients | Early | Late | Istanbul | Anatolia | |
| AUC‐ROC | 0.942 | 0.933 | 0.956 | 0.958 | 0.896 |
|
| .461 | .454 | .439 | .531 | .324 |
| Brier‐scaled | 0.272 | 0.281 | 0.158 | 0.352 | 0.146 |
| Intercept | 0.000 | 0.000 | −0.583 | 0.000 | −0.152 |
| Slope | 1.000 | 1.000 | 1.022 | 1.000 | 0.548 |