Literature DB >> 33526011

Single-cell RNA-seq reveals a concomitant delay in differentiation and cell cycle of aged hematopoietic stem cells.

Élisabeth Remy1, Estelle Duprez2, Léonard Hérault3,1, Mathilde Poplineau3, Adrien Mazuel3, Nadine Platet3.   

Abstract

BACKGROUND: Hematopoietic stem cells (HSCs) are the guarantor of the proper functioning of hematopoiesis due to their incredible diversity of potential. During aging, heterogeneity of HSCs changes, contributing to the deterioration of the immune system. In this study, we revisited mouse HSC compartment and its transcriptional plasticity during aging at unicellular scale.
RESULTS: Through the analysis of 15,000 young and aged transcriptomes, we identified 15 groups of HSCs revealing rare and new specific HSC abilities that change with age. The implantation of new trajectories complemented with the analysis of transcription factor activities pointed consecutive states of HSC differentiation that were delayed by aging and explained the bias in differentiation of older HSCs. Moreover, reassigning cell cycle phases for each HSC clearly highlighted an imbalance of the cell cycle regulators of very immature aged HSCs that may contribute to their accumulation in an undifferentiated state.
CONCLUSIONS: Our results establish a new reference map of HSC differentiation in young and aged mice and reveal a potential mechanism that delays the differentiation of aged HSCs and could promote the emergence of age-related hematologic diseases.

Entities:  

Keywords:  Aging; Cell cycle; Differentiation; Hematopoietic stem cell; Single-cell RNA-seq; Trajectories

Year:  2021        PMID: 33526011      PMCID: PMC7851934          DOI: 10.1186/s12915-021-00955-z

Source DB:  PubMed          Journal:  BMC Biol        ISSN: 1741-7007            Impact factor:   7.431


  63 in total

1.  A clonogenic common myeloid progenitor that gives rise to all myeloid lineages.

Authors:  K Akashi; D Traver; T Miyamoto; I L Weissman
Journal:  Nature       Date:  2000-03-09       Impact factor: 49.962

2.  Identification of Flt3+ lympho-myeloid stem cells lacking erythro-megakaryocytic potential a revised road map for adult blood lineage commitment.

Authors:  Jörgen Adolfsson; Robert Månsson; Natalija Buza-Vidas; Anne Hultquist; Karina Liuba; Christina T Jensen; David Bryder; Liping Yang; Ole-Johan Borge; Lina A M Thoren; Kristina Anderson; Ewa Sitnicka; Yutaka Sasaki; Mikael Sigvardsson; Sten Eirik W Jacobsen
Journal:  Cell       Date:  2005-04-22       Impact factor: 41.582

3.  Clonal analysis unveils self-renewing lineage-restricted progenitors generated directly from hematopoietic stem cells.

Authors:  Ryo Yamamoto; Yohei Morita; Jun Ooehara; Sanae Hamanaka; Masafumi Onodera; Karl Lenhard Rudolph; Hideo Ema; Hiromitsu Nakauchi
Journal:  Cell       Date:  2013-08-29       Impact factor: 41.582

Review 4.  Causes and Consequences of Hematopoietic Stem Cell Heterogeneity.

Authors:  Simon Haas; Andreas Trumpp; Michael D Milsom
Journal:  Cell Stem Cell       Date:  2018-05-03       Impact factor: 24.633

5.  Long-term lymphohematopoietic reconstitution by a single CD34-low/negative hematopoietic stem cell.

Authors:  M Osawa; K Hanada; H Hamada; H Nakauchi
Journal:  Science       Date:  1996-07-12       Impact factor: 47.728

6.  Heterogeneity and hierarchy within the most primitive hematopoietic stem cell compartment.

Authors:  Yohei Morita; Hideo Ema; Hiromitsu Nakauchi
Journal:  J Exp Med       Date:  2010-04-26       Impact factor: 14.307

7.  Purification and characterization of mouse hematopoietic stem cells.

Authors:  G J Spangrude; S Heimfeld; I L Weissman
Journal:  Science       Date:  1988-07-01       Impact factor: 47.728

8.  SLAM family markers resolve functionally distinct subpopulations of hematopoietic stem cells and multipotent progenitors.

Authors:  Hideyuki Oguro; Lei Ding; Sean J Morrison
Journal:  Cell Stem Cell       Date:  2013-07-03       Impact factor: 24.633

9.  Clonal analysis reveals multiple functional defects of aged murine hematopoietic stem cells.

Authors:  Brad Dykstra; Sandra Olthof; Jaring Schreuder; Martha Ritsema; Gerald de Haan
Journal:  J Exp Med       Date:  2011-11-21       Impact factor: 14.307

10.  Clonal analysis of lineage fate in native haematopoiesis.

Authors:  Alejo E Rodriguez-Fraticelli; Samuel L Wolock; Caleb S Weinreb; Riccardo Panero; Sachin H Patel; Maja Jankovic; Jianlong Sun; Raffaele A Calogero; Allon M Klein; Fernando D Camargo
Journal:  Nature       Date:  2018-01-03       Impact factor: 49.962

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  4 in total

1.  Comparative Toxicotranscriptomics of Single Cell RNA-Seq and Conventional RNA-Seq in TCDD-Exposed Testicular Tissue.

Authors:  Alex Haimbaugh; Danielle Meyer; Camille Akemann; Katherine Gurdziel; Tracie R Baker
Journal:  Front Toxicol       Date:  2022-05-09

2.  Author Correction to: Single-cell RNA-seq reveals a concomitant delay in differentiation and cell cycle of aged hematopoietic stem cells.

Authors:  Élisabeth Remy; Estelle Duprez; Léonard Hérault; Mathilde Poplineau; Adrien Mazuel; Nadine Platet
Journal:  BMC Biol       Date:  2021-04-16       Impact factor: 7.431

Review 3.  Aging and Clonal Behavior of Hematopoietic Stem Cells.

Authors:  Masayuki Yamashita; Atsushi Iwama
Journal:  Int J Mol Sci       Date:  2022-02-09       Impact factor: 5.923

Review 4.  Single Cell Transcriptomics to Understand HSC Heterogeneity and Its Evolution upon Aging.

Authors:  Léonard Hérault; Mathilde Poplineau; Elisabeth Remy; Estelle Duprez
Journal:  Cells       Date:  2022-10-04       Impact factor: 7.666

  4 in total

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