Literature DB >> 33522809

Discovery of Small-Molecule Antagonists of the PWWP Domain of NSD2.

Renato Ferreira de Freitas1, Yanli Liu1, Magdalena M Szewczyk1, Naimee Mehta2, Fengling Li1, David McLeod3, Carlos Zepeda-Velázquez3, David Dilworth1, Ronan P Hanley2, Elisa Gibson1, Peter J Brown1, Rima Al-Awar3, Lindsey I James2, Cheryl H Arrowsmith1,4, Dalia Barsyte-Lovejoy1,5, Jinrong Min1,6, Masoud Vedadi1,5, Matthieu Schapira1,5, Abdellah Allali-Hassani1.   

Abstract

Increased activity of the lysine methyltransferase NSD2 driven by translocation and activating mutations is associated with multiple myeloma and acute lymphoblastic leukemia, but no NSD2-targeting chemical probe has been reported to date. Here, we present the first antagonists that block the protein-protein interaction between the N-terminal PWWP domain of NSD2 and H3K36me2. Using virtual screening and experimental validation, we identified the small-molecule antagonist 3f, which binds to the NSD2-PWWP1 domain with a Kd of 3.4 μM and abrogates histone H3K36me2 binding to the PWWP1 domain in cells. This study establishes an alternative approach to targeting NSD2 and provides a small-molecule antagonist that can be further optimized into a chemical probe to better understand the cellular function of this protein.

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Year:  2021        PMID: 33522809      PMCID: PMC8130708          DOI: 10.1021/acs.jmedchem.0c01768

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  19 in total

1.  Coot: model-building tools for molecular graphics.

Authors:  Paul Emsley; Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2004-11-26

2.  Screening for ligands using a generic and high-throughput light-scattering-based assay.

Authors:  Guillermo A Senisterra; Eugene Markin; Ken Yamazaki; Raymond Hui; Masoud Vedadi; Donald E Awrey
Journal:  J Biomol Screen       Date:  2006-11-07

3.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

Review 4.  Structure and function of the nucleosome-binding PWWP domain.

Authors:  Su Qin; Jinrong Min
Journal:  Trends Biochem Sci       Date:  2014-09-29       Impact factor: 13.807

5.  High-throughput screening with nucleosome substrate identifies small-molecule inhibitors of the human histone lysine methyltransferase NSD2.

Authors:  Nathan P Coussens; Stephen C Kales; Mark J Henderson; Olivia W Lee; Kurumi Y Horiuchi; Yuren Wang; Qing Chen; Ekaterina Kuznetsova; Jianghong Wu; Sirisha Chakka; Dorian M Cheff; Ken Chih-Chien Cheng; Paul Shinn; Kyle R Brimacombe; Min Shen; Anton Simeonov; Madhu Lal-Nag; Haiching Ma; Ajit Jadhav; Matthew D Hall
Journal:  J Biol Chem       Date:  2018-06-26       Impact factor: 5.157

6.  Point mutation E1099K in MMSET/NSD2 enhances its methyltranferase activity and leads to altered global chromatin methylation in lymphoid malignancies.

Authors:  J A Oyer; X Huang; Y Zheng; J Shim; T Ezponda; Z Carpenter; M Allegretta; C I Okot-Kotber; J P Patel; A Melnick; R L Levine; A Ferrando; A D Mackerell; N L Kelleher; J D Licht; R Popovic
Journal:  Leukemia       Date:  2013-07-04       Impact factor: 11.528

7.  Structure of the Epigenetic Oncogene MMSET and Inhibition by N-Alkyl Sinefungin Derivatives.

Authors:  Dominic Tisi; Elisabetta Chiarparin; Emiliano Tamanini; Puja Pathuri; Joseph E Coyle; Adam Hold; Finn P Holding; Nader Amin; Agnes C L Martin; Sharna J Rich; Valerio Berdini; Jeff Yon; Paul Acklam; Rosemary Burke; Ludovic Drouin; Jenny E Harmer; Fiona Jeganathan; Rob L M van Montfort; Yvette Newbatt; Marcello Tortorici; Maura Westlake; Amy Wood; Swen Hoelder; Tom D Heightman
Journal:  ACS Chem Biol       Date:  2016-09-27       Impact factor: 5.100

8.  NSD2 is recruited through its PHD domain to oncogenic gene loci to drive multiple myeloma.

Authors:  Zheng Huang; Haiping Wu; Shannon Chuai; Fiona Xu; Feng Yan; Nathan Englund; Zhaofu Wang; Hailong Zhang; Ming Fang; Youzhen Wang; Justin Gu; Man Zhang; Teddy Yang; Kehao Zhao; Yanyan Yu; Jingquan Dai; Wei Yi; Shaolian Zhou; Qian Li; Jing Wu; Jun Liu; Xu Wu; Homan Chan; Chris Lu; Peter Atadja; En Li; Yan Wang; Min Hu
Journal:  Cancer Res       Date:  2013-08-26       Impact factor: 12.701

9.  Fragment-based discovery of a chemical probe for the PWWP1 domain of NSD3.

Authors:  Jark Böttcher; David Dilworth; Ulrich Reiser; Ralph A Neumüller; Michael Schleicher; Mark Petronczki; Markus Zeeb; Nikolai Mischerikow; Abdellah Allali-Hassani; Magdalena M Szewczyk; Fengling Li; Steven Kennedy; Masoud Vedadi; Dalia Barsyte-Lovejoy; Peter J Brown; Kilian V M Huber; Catherine M Rogers; Carrow I Wells; Oleg Fedorov; Klaus Rumpel; Andreas Zoephel; Moriz Mayer; Tobias Wunberg; Dietrich Böse; Stephan Zahn; Heribert Arnhof; Helmut Berger; Christoph Reiser; Alexandra Hörmann; Teresa Krammer; Maja Corcokovic; Bernadette Sharps; Sandra Winkler; Daniela Häring; Xiao-Ling Cockcroft; Julian E Fuchs; Barbara Müllauer; Alexander Weiss-Puxbaum; Thomas Gerstberger; Guido Boehmelt; Christopher R Vakoc; Cheryl H Arrowsmith; Mark Pearson; Darryl B McConnell
Journal:  Nat Chem Biol       Date:  2019-07-08       Impact factor: 16.174

10.  Covalent inhibition of NSD1 histone methyltransferase.

Authors:  Huang Huang; Christina A Howard; Sergei Zari; Hyo Je Cho; Shirish Shukla; Hao Li; Juliano Ndoj; Paula González-Alonso; Caroline Nikolaidis; Joshua Abbott; David S Rogawski; Mykhaylo A Potopnyk; Katarzyna Kempinska; Hongzhi Miao; Trupta Purohit; Andrew Henderson; Anna Mapp; Maria Luisa Sulis; Adolfo Ferrando; Jolanta Grembecka; Tomasz Cierpicki
Journal:  Nat Chem Biol       Date:  2020-08-31       Impact factor: 15.040

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  5 in total

Review 1.  Lysine methyltransferase inhibitors: where we are now.

Authors:  Alessandra Feoli; Monica Viviano; Alessandra Cipriano; Ciro Milite; Sabrina Castellano; Gianluca Sbardella
Journal:  RSC Chem Biol       Date:  2021-12-13

2.  Discovery of a First-in-Class Degrader for Nuclear Receptor Binding SET Domain Protein 2 (NSD2) and Ikaros/Aiolos.

Authors:  Fanye Meng; Chenxi Xu; Kwang-Su Park; H Ümit Kaniskan; Gang Greg Wang; Jian Jin
Journal:  J Med Chem       Date:  2022-07-27       Impact factor: 8.039

3.  A chemical probe targeting the PWWP domain alters NSD2 nucleolar localization.

Authors:  David Dilworth; Ronan P Hanley; Renato Ferreira de Freitas; Abdellah Allali-Hassani; Mengqi Zhou; Naimee Mehta; Matthew R Marunde; Suzanne Ackloo; Raquel Arminda Carvalho Machado; Aliakbar Khalili Yazdi; Dominic D G Owens; Victoria Vu; David Y Nie; Mona Alqazzaz; Edyta Marcon; Fengling Li; Irene Chau; Albina Bolotokova; Su Qin; Ming Lei; Yanli Liu; Magdalena M Szewczyk; Aiping Dong; Sina Kazemzadeh; Tigran Abramyan; Irina K Popova; Nathan W Hall; Matthew J Meiners; Marcus A Cheek; Elisa Gibson; Dmitri Kireev; Jack F Greenblatt; Michael-C Keogh; Jinrong Min; Peter J Brown; Masoud Vedadi; Cheryl H Arrowsmith; Dalia Barsyte-Lovejoy; Lindsey I James; Matthieu Schapira
Journal:  Nat Chem Biol       Date:  2021-11-15       Impact factor: 16.174

Review 4.  NSD2 as a Promising Target in Hematological Disorders.

Authors:  Alba Azagra; César Cobaleda
Journal:  Int J Mol Sci       Date:  2022-09-21       Impact factor: 6.208

5.  ZMYND8-regulated IRF8 transcription axis is an acute myeloid leukemia dependency.

Authors:  Zhendong Cao; Krista A Budinich; Hua Huang; Diqiu Ren; Bin Lu; Zhen Zhang; Qingzhou Chen; Yeqiao Zhou; Yu-Han Huang; Fatemeh Alikarami; Molly C Kingsley; Alexandra K Lenard; Aoi Wakabayashi; Eugene Khandros; Will Bailis; Jun Qi; Martin P Carroll; Gerd A Blobel; Robert B Faryabi; Kathrin M Bernt; Shelley L Berger; Junwei Shi
Journal:  Mol Cell       Date:  2021-08-05       Impact factor: 17.970

  5 in total

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