Literature DB >> 33522015

Translocation of DNA through Ultrathin Nanoslits.

Wayne Yang1, Boya Radha2,3, Adnan Choudhary4, Yi You2,3, Gangaiah Mettela2, Andre K Geim2,3, Aleksei Aksimentiev4, Ashok Keerthi3,5, Cees Dekker1.   

Abstract

2D nanoslit devices, where two crystals with atomically flat surfaces are separated by only a few nanometers, have attracted considerable attention because their tunable control over the confinement allows for the discovery of unusual transport behavior of gas, water, and ions. Here, the passage of double-stranded DNA molecules is studied through nanoslits fabricated from exfoliated 2D materials, such as graphene or hexagonal boron nitride, and the DNA polymer behavior is examined in this tight confinement. Two types of events are observed in the ionic current: long current blockades that signal DNA translocation and short spikes where DNA enters the slits but withdraws. DNA translocation events exhibit three distinct phases in their current-blockade traces-loading, translation, and exit. Coarse-grained molecular dynamics simulation allows the different polymer configurations of these phases to be identified. DNA molecules, including folds and knots in their polymer structure, are observed to slide through the slits with near-uniform velocity without noticeable frictional interactions of DNA with the confining graphene surfaces. It is anticipated that this new class of 2D-nanoslit devices will provide unique ways to study polymer physics and enable lab-on-a-chip biotechnology.
© 2021 The Authors. Advanced Materials published by Wiley-VCH GmbH.

Entities:  

Keywords:  2D nanoslits; DNA translocation; biopolymers; graphene; nanofluidics

Mesh:

Substances:

Year:  2021        PMID: 33522015      PMCID: PMC8011289          DOI: 10.1002/adma.202007682

Source DB:  PubMed          Journal:  Adv Mater        ISSN: 0935-9648            Impact factor:   30.849


  41 in total

1.  Entropic recoil separation of long DNA molecules.

Authors:  Mario Cabodi; Stephen W P Turner; Harold G Craighead
Journal:  Anal Chem       Date:  2002-10-15       Impact factor: 6.986

2.  Translocation of double-strand DNA through a silicon oxide nanopore.

Authors:  A J Storm; J H Chen; H W Zandbergen; C Dekker
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2005-05-06

Review 3.  Solid-state nanopores.

Authors:  Cees Dekker
Journal:  Nat Nanotechnol       Date:  2007-03-04       Impact factor: 39.213

4.  Field-dependent DNA mobility in 20 nm high nanoslits.

Authors:  Georgette B Salieb-Beugelaar; Juliane Teapal; Jan van Nieuwkasteele; Daniël Wijnperlé; Jonas O Tegenfeldt; Fred Lisdat; Albert van den Berg; Jan C T Eijkel
Journal:  Nano Lett       Date:  2008-04-05       Impact factor: 11.189

5.  Origins and consequences of velocity fluctuations during DNA passage through a nanopore.

Authors:  Bo Lu; Fernando Albertorio; David P Hoogerheide; Jene A Golovchenko
Journal:  Biophys J       Date:  2011-07-06       Impact factor: 4.033

6.  Stochastic transport through carbon nanotubes in lipid bilayers and live cell membranes.

Authors:  Jia Geng; Kyunghoon Kim; Jianfei Zhang; Artur Escalada; Ramya Tunuguntla; Luis R Comolli; Frances I Allen; Anna V Shnyrova; Kang Rae Cho; Dayannara Munoz; Y Morris Wang; Costas P Grigoropoulos; Caroline M Ajo-Franklin; Vadim A Frolov; Aleksandr Noy
Journal:  Nature       Date:  2014-10-30       Impact factor: 49.962

7.  Molecular transport through capillaries made with atomic-scale precision.

Authors:  B Radha; A Esfandiar; F C Wang; A P Rooney; K Gopinadhan; A Keerthi; A Mishchenko; A Janardanan; P Blake; L Fumagalli; M Lozada-Hidalgo; S Garaj; S J Haigh; I V Grigorieva; H A Wu; A K Geim
Journal:  Nature       Date:  2016-09-07       Impact factor: 49.962

8.  Fabrication of sub-5 nm nanochannels in insulating substrates using focused ion beam milling.

Authors:  Laurent D Menard; J Michael Ramsey
Journal:  Nano Lett       Date:  2010-12-20       Impact factor: 11.189

9.  Graphene as a subnanometre trans-electrode membrane.

Authors:  S Garaj; W Hubbard; A Reina; J Kong; D Branton; J A Golovchenko
Journal:  Nature       Date:  2010-08-18       Impact factor: 49.962

10.  Conformational transitions and stop-and-go nanopore transport of single-stranded DNA on charged graphene.

Authors:  Manish Shankla; Aleksei Aksimentiev
Journal:  Nat Commun       Date:  2014-10-09       Impact factor: 14.919

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  3 in total

1.  Discrimination of RNA fiber structures using solid-state nanopores.

Authors:  Prabhat Tripathi; Morgan Chandler; Christopher Michael Maffeo; Ali Fallahi; Amr Makhamreh; Justin Halman; Aleksei Aksimentiev; Kirill A Afonin; Meni Wanunu
Journal:  Nanoscale       Date:  2022-05-16       Impact factor: 8.307

Review 2.  Multi-resolution simulation of DNA transport through large synthetic nanostructures.

Authors:  Adnan Choudhary; Christopher Maffeo; Aleksei Aksimentiev
Journal:  Phys Chem Chem Phys       Date:  2022-02-02       Impact factor: 3.676

3.  Ionic current magnetic fields in 3D finite-length nanopores and nanoslits.

Authors:  Seyed Ali Tabatabaei; Abraham Mansouri; Ali Tarokh; Seyed Farshid Chini
Journal:  Eur Phys J Plus       Date:  2022-03-07       Impact factor: 3.911

  3 in total

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