Literature DB >> 25170151

Longitudinal analysis of microbial interaction between humans and the indoor environment.

Simon Lax1, Daniel P Smith2, Jarrad Hampton-Marcell1, Sarah M Owens3, Kim M Handley1, Nicole M Scott1, Sean M Gibbons4, Peter Larsen5, Benjamin D Shogan6, Sophie Weiss7, Jessica L Metcalf8, Luke K Ursell9, Yoshiki Vázquez-Baeza10, Will Van Treuren8, Nur A Hasan11, Molly K Gibson12, Rita Colwell11, Gautam Dantas12, Rob Knight13, Jack A Gilbert14.   

Abstract

The bacteria that colonize humans and our built environments have the potential to influence our health. Microbial communities associated with seven families and their homes over 6 weeks were assessed, including three families that moved their home. Microbial communities differed substantially among homes, and the home microbiome was largely sourced from humans. The microbiota in each home were identifiable by family. Network analysis identified humans as the primary bacterial vector, and a Bayesian method significantly matched individuals to their dwellings. Draft genomes of potential human pathogens observed on a kitchen counter could be matched to the hands of occupants. After a house move, the microbial community in the new house rapidly converged on the microbial community of the occupants' former house, suggesting rapid colonization by the family's microbiota.
Copyright © 2014, American Association for the Advancement of Science.

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Year:  2014        PMID: 25170151      PMCID: PMC4337996          DOI: 10.1126/science.1254529

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  26 in total

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Authors:  P Höppe; I Martinac
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Authors:  Kei E Fujimura; Tine Demoor; Marcus Rauch; Ali A Faruqi; Sihyug Jang; Christine C Johnson; Homer A Boushey; Edward Zoratti; Dennis Ownby; Nicholas W Lukacs; Susan V Lynch
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4.  Bayesian community-wide culture-independent microbial source tracking.

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Journal:  Nat Methods       Date:  2011-07-17       Impact factor: 28.547

5.  UniFrac: a new phylogenetic method for comparing microbial communities.

Authors:  Catherine Lozupone; Rob Knight
Journal:  Appl Environ Microbiol       Date:  2005-12       Impact factor: 4.792

6.  Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms.

Authors:  J Gregory Caporaso; Christian L Lauber; William A Walters; Donna Berg-Lyons; James Huntley; Noah Fierer; Sarah M Owens; Jason Betley; Louise Fraser; Markus Bauer; Niall Gormley; Jack A Gilbert; Geoff Smith; Rob Knight
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7.  The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes.

Authors:  F Meyer; D Paarmann; M D'Souza; R Olson; E M Glass; M Kubal; T Paczian; A Rodriguez; R Stevens; A Wilke; J Wilkening; R A Edwards
Journal:  BMC Bioinformatics       Date:  2008-09-19       Impact factor: 3.169

8.  Microbial community profiling of human saliva using shotgun metagenomic sequencing.

Authors:  Nur A Hasan; Brian A Young; Angela T Minard-Smith; Kelly Saeed; Huai Li; Esley M Heizer; Nancy J McMillan; Richard Isom; Abdul Shakur Abdullah; Daniel M Bornman; Seth A Faith; Seon Young Choi; Michael L Dickens; Thomas A Cebula; Rita R Colwell
Journal:  PLoS One       Date:  2014-05-20       Impact factor: 3.240

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Journal:  BMC Genomics       Date:  2008-02-08       Impact factor: 3.969

10.  The airborne metagenome in an indoor urban environment.

Authors:  Susannah G Tringe; Tao Zhang; Xuguo Liu; Yiting Yu; Wah Heng Lee; Jennifer Yap; Fei Yao; Sim Tiow Suan; Seah Keng Ing; Matthew Haynes; Forest Rohwer; Chia Lin Wei; Patrick Tan; James Bristow; Edward M Rubin; Yijun Ruan
Journal:  PLoS One       Date:  2008-04-02       Impact factor: 3.240

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  318 in total

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2.  The ecology of microscopic life in household dust.

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Journal:  Proc Biol Sci       Date:  2015-09-07       Impact factor: 5.349

3.  Urban stress is associated with variation in microbial species composition-but not richness-in Manhattan.

Authors:  Aspen T Reese; Amy Savage; Elsa Youngsteadt; Krista L McGuire; Adam Koling; Olivia Watkins; Steven D Frank; Robert R Dunn
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4.  The Bacteroides fragilis pathogenicity island links virulence and strain competition.

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5.  Interplay of personal, pet, and environmental colonization in households affected by community-associated methicillin-resistant Staphylococcus aureus.

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6.  Fabric-skin models to assess infection transfer for impetigo contagiosa in a kindergarten scenario.

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8.  Longitudinal Effects of Supplemental Forage on the Honey Bee (Apis mellifera) Microbiota and Inter- and Intra-Colony Variability.

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Review 9.  Sequencing and beyond: integrating molecular 'omics' for microbial community profiling.

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Review 10.  Functional genomic insights into the environmental determinants of mammalian fitness.

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