Literature DB >> 33519290

Phase Separation and Histone Epigenetics in Genome Regulation.

Reed E S Harrison1,2, Kegui Weng1,2,3, Yingxiao Wang1,2, Qin Peng1,2.   

Abstract

Liquid-liquid phase separation is increasingly recognized as a phenomenon that affects cell behavior. For example, phase separation of transcription factors and coactivators has been shown to drive efficient transcription. For many years, phase separation of intracellular components has been observed; however, only recently have researchers been able to garner functional significance from such events. Inspired from recent literature that describes phase separation of chromatin in a histone-dependent manner, we review the role and effect of phase separation and histone epigenetics in regulating the genome and discuss how these phenomena can be leveraged to control cell behavior.

Entities:  

Keywords:  Chromatin; Genome regulation; Histone epigenetics; Phase separation

Year:  2020        PMID: 33519290      PMCID: PMC7845916          DOI: 10.1016/j.cossms.2020.100892

Source DB:  PubMed          Journal:  Curr Opin Solid State Mater Sci        ISSN: 1359-0286            Impact factor:   11.354


  91 in total

Review 1.  Role of histone acetylation in the control of gene expression.

Authors:  Loredana Verdone; Micaela Caserta; Ernesto Di Mauro
Journal:  Biochem Cell Biol       Date:  2005-06       Impact factor: 3.626

Review 2.  Erasing the methyl mark: histone demethylases at the center of cellular differentiation and disease.

Authors:  Paul A C Cloos; Jesper Christensen; Karl Agger; Kristian Helin
Journal:  Genes Dev       Date:  2008-05-01       Impact factor: 11.361

Review 3.  A Phase Separation Model for Transcriptional Control.

Authors:  Denes Hnisz; Krishna Shrinivas; Richard A Young; Arup K Chakraborty; Phillip A Sharp
Journal:  Cell       Date:  2017-03-23       Impact factor: 41.582

Review 4.  The power and the promise of DNA methylation markers.

Authors:  Peter W Laird
Journal:  Nat Rev Cancer       Date:  2003-04       Impact factor: 60.716

Review 5.  The liquid nucleome - phase transitions in the nucleus at a glance.

Authors:  Amy R Strom; Clifford P Brangwynne
Journal:  J Cell Sci       Date:  2019-11-21       Impact factor: 5.285

6.  HP1 binds specifically to Lys26-methylated histone H1.4, whereas simultaneous Ser27 phosphorylation blocks HP1 binding.

Authors:  Sylvain Daujat; Ulrike Zeissler; Tanja Waldmann; Nicole Happel; Robert Schneider
Journal:  J Biol Chem       Date:  2005-08-28       Impact factor: 5.157

7.  Coactivator condensation at super-enhancers links phase separation and gene control.

Authors:  Benjamin R Sabari; Alessandra Dall'Agnese; Ann Boija; Isaac A Klein; Eliot L Coffey; Krishna Shrinivas; Brian J Abraham; Nancy M Hannett; Alicia V Zamudio; John C Manteiga; Charles H Li; Yang E Guo; Daniel S Day; Jurian Schuijers; Eliza Vasile; Sohail Malik; Denes Hnisz; Tong Ihn Lee; Ibrahim I Cisse; Robert G Roeder; Phillip A Sharp; Arup K Chakraborty; Richard A Young
Journal:  Science       Date:  2018-06-21       Impact factor: 47.728

8.  Mediator and RNA polymerase II clusters associate in transcription-dependent condensates.

Authors:  Won-Ki Cho; Jan-Hendrik Spille; Micca Hecht; Choongman Lee; Charles Li; Valentin Grube; Ibrahim I Cisse
Journal:  Science       Date:  2018-06-21       Impact factor: 47.728

Review 9.  Transcription factors and 3D genome conformation in cell-fate decisions.

Authors:  Ralph Stadhouders; Guillaume J Filion; Thomas Graf
Journal:  Nature       Date:  2019-05-15       Impact factor: 49.962

10.  miR-29a contributes to breast cancer cells epithelial-mesenchymal transition, migration, and invasion via down-regulating histone H4K20 trimethylation through directly targeting SUV420H2.

Authors:  You Wu; Wanyue Shi; Tingting Tang; Yidong Wang; Xin Yin; Yanlin Chen; Yanfeng Zhang; Yun Xing; Yumeng Shen; Tiansong Xia; Changying Guo; Yi Pan; Liang Jin
Journal:  Cell Death Dis       Date:  2019-02-21       Impact factor: 8.469

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  1 in total

Review 1.  Pseudogenes and Liquid Phase Separation in Epigenetic Expression.

Authors:  Bernard Nsengimana; Faiz Ali Khan; Usman Ayub Awan; Dandan Wang; Na Fang; Wenqiang Wei; Weijuan Zhang; Shaoping Ji
Journal:  Front Oncol       Date:  2022-07-08       Impact factor: 5.738

  1 in total

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