Literature DB >> 33517098

Designing better enzymes: Insights from directed evolution.

H Adrian Bunzel1, J L Ross Anderson2, Adrian J Mulholland3.   

Abstract

De novo enzymes can be created by computational design and directed evolution. Here, we review recent insights into the origins of catalytic power in evolved designer enzymes to pinpoint opportunities for next-generation designs: Evolution precisely organizes active sites, introduces catalytic H-bonding networks, invokes electrostatic catalysis, and creates dynamical networks embedding the active site in a reactive protein scaffold. Such insights foster our fundamental knowledge of enzyme catalysis and fuel the future design of tailor-made enzymes.
Copyright © 2021 Elsevier Ltd. All rights reserved.

Year:  2021        PMID: 33517098     DOI: 10.1016/j.sbi.2020.12.015

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  11 in total

Review 1.  Learning Strategies in Protein Directed Evolution.

Authors:  Xavier F Cadet; Jean Christophe Gelly; Aster van Noord; Frédéric Cadet; Carlos G Acevedo-Rocha
Journal:  Methods Mol Biol       Date:  2022

2.  The Influence of Codon Usage, Protein Abundance, and Protein Stability on Protein Evolution Vary by Evolutionary Distance and the Type of Protein.

Authors:  Peter M Palenchar
Journal:  Protein J       Date:  2022-02-11       Impact factor: 2.371

3.  Evolution of dynamical networks enhances catalysis in a designer enzyme.

Authors:  H Adrian Bunzel; J L Ross Anderson; Donald Hilvert; Vickery L Arcus; Marc W van der Kamp; Adrian J Mulholland
Journal:  Nat Chem       Date:  2021-08-19       Impact factor: 24.427

Review 4.  Klebsiella pneumoniae Carbapenemase Variants Resistant to Ceftazidime-Avibactam: an Evolutionary Overview.

Authors:  Claire Amaris Hobson; Gautier Pierrat; Olivier Tenaillon; Stéphane Bonacorsi; Béatrice Bercot; Ella Jaouen; Hervé Jacquier; André Birgy
Journal:  Antimicrob Agents Chemother       Date:  2022-08-18       Impact factor: 5.938

5.  Generalized Born Implicit Solvent Models Do Not Reproduce Secondary Structures of De Novo Designed Glu/Lys Peptides.

Authors:  Eric J M Lang; Emily G Baker; Derek N Woolfson; Adrian J Mulholland
Journal:  J Chem Theory Comput       Date:  2022-06-10       Impact factor: 6.578

6.  Allosteric communication in class A β-lactamases occurs via cooperative coupling of loop dynamics.

Authors:  Ioannis Galdadas; Shen Qu; Ana Sofia F Oliveira; Edgar Olehnovics; Andrew R Mack; Maria F Mojica; Pratul K Agarwal; Catherine L Tooke; Francesco Luigi Gervasio; James Spencer; Robert A Bonomo; Adrian J Mulholland; Shozeb Haider
Journal:  Elife       Date:  2021-03-23       Impact factor: 8.140

7.  Modulating Glycoside Hydrolase Activity between Hydrolysis and Transfer Reactions Using an Evolutionary Approach.

Authors:  Rodrigo A Arreola-Barroso; Alexey Llopiz; Leticia Olvera; Gloria Saab-Rincón
Journal:  Molecules       Date:  2021-10-30       Impact factor: 4.411

Review 8.  Intelligent host engineering for metabolic flux optimisation in biotechnology.

Authors:  Lachlan J Munro; Douglas B Kell
Journal:  Biochem J       Date:  2021-10-29       Impact factor: 3.857

9.  Autonomous Reaction Network Exploration in Homogeneous and Heterogeneous Catalysis.

Authors:  Miguel Steiner; Markus Reiher
Journal:  Top Catal       Date:  2022-01-13       Impact factor: 2.910

10.  In vivo, in vitro and in silico: an open space for the development of microbe-based applications of synthetic biology.

Authors:  Antoine Danchin
Journal:  Microb Biotechnol       Date:  2021-09-27       Impact factor: 5.813

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