Literature DB >> 33515354

A DFT study on the adsorption of DNA nucleobases on the C3N nanotubes as a sequencer.

Jie Zhao1, Wenli Li2, Saeed Amir Aslanzadeh3.   

Abstract

Deoxyribonucleic acid (DNA) sequencing is a crucial issue for the cure of different kinds of diseases. Here, we computationally explored the effect of DNA nucleobases on the electronic properties and electrical conductivity of a zigzag (10,0) C3N nanotube (C3NNT) at B3LYP-gCP-D3 level of theory. Our calculations revealed that the binding energy of nucleobases shows the order of guanine (G) > cytosine (C) > thymine (T) > adenine (A). Based on the energy decomposition analysis (EDA), the G, C, and T strongly interact with the C3NNT, but the A nucleobase adsorbed mainly via electrostatic attraction and dispersion forces. We exposed that the nucleobase size and its carbonyl group determine its adsorption behavior. The DNA nucleobase adsorption meaningfully increased the electrical conductivity of C3NNT. The C3NNT sensing response toward G, C, T, or A was predicted to be 131, 66, 60, or 10. Therefore, the C3NNT might be applied to selectively detect the G, C, T, and A. Our findings expose the usefulness of C3NNT as a next-generation DNA sequencer, suggesting new leads for future progresses in sustainable designs, superior sensing architectures, and bioelectronics.

Entities:  

Keywords:  Adsorption; DNA nucleobase; Density functional; Sensor

Year:  2021        PMID: 33515354     DOI: 10.1007/s00894-021-04672-w

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  15 in total

1.  Construction of Tb-MOF-on-Fe-MOF conjugate as a novel platform for ultrasensitive detection of carbohydrate antigen 125 and living cancer cells.

Authors:  Minghua Wang; Mengyao Hu; Zhenzhen Li; Linghao He; Yingpan Song; Qiaojuan Jia; Zhihong Zhang; Miao Du
Journal:  Biosens Bioelectron       Date:  2019-07-25       Impact factor: 10.618

2.  Si-doped graphene: an ideal sensor for NO- or NO2-detection and metal-free catalyst for N2O-reduction.

Authors:  Ying Chen; Bo Gao; Jing-Xiang Zhao; Qing-Hai Cai; Hong-Gang Fu
Journal:  J Mol Model       Date:  2011-09-01       Impact factor: 1.810

3.  Use of automated sequencing of polymerase chain reaction-generated amplicons to identify three types of cholera toxin subunit B in Vibrio cholerae O1 strains.

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Journal:  J Clin Microbiol       Date:  1993-01       Impact factor: 5.948

4.  Thermodynamic stability and electronic structure of small carbon nitride nanotubes.

Authors:  John Hales; Amanda S Barnard
Journal:  J Phys Condens Matter       Date:  2009-03-18       Impact factor: 2.333

Review 5.  Recent progress in atomistic simulation of electrical current DNA sequencing.

Authors:  Han Seul Kim; Yong-Hoon Kim
Journal:  Biosens Bioelectron       Date:  2015-02-11       Impact factor: 10.618

6.  N-H bond cleavage of ammonia on graphene-like B36 borophene: DFT studies.

Authors:  Zahra Rostami; Hamed Soleymanabadi
Journal:  J Mol Model       Date:  2016-03-11       Impact factor: 1.810

7.  First principles calculations of the electronic and chemical properties of graphene, graphane, and graphene oxide.

Authors:  J J Hernández Rosas; R E Ramírez Gutiérrez; A Escobedo-Morales; Ernesto Chigo Anota
Journal:  J Mol Model       Date:  2010-08-03       Impact factor: 1.810

8.  DNA sequence determination by hybridization: a strategy for efficient large-scale sequencing.

Authors:  R Drmanac; S Drmanac; Z Strezoska; T Paunesku; I Labat; M Zeremski; J Snoddy; W K Funkhouser; B Koop; L Hood
Journal:  Science       Date:  1993-06-11       Impact factor: 47.728

9.  [Acute disseminated intravascular coagulation caused by heparin therapy].

Authors:  G Bozóky; J Varga; F Biliczki
Journal:  Orv Hetil       Date:  1981-06-07       Impact factor: 0.540

10.  Computational study of the NO, SO2, and NH3 adsorptions on fragments of 3N-graphene and Al/3N graphene.

Authors:  Yao-Dong Song; Liang Wang; Qian-Ting Wang
Journal:  J Mol Model       Date:  2018-07-18       Impact factor: 1.810

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