Literature DB >> 33513392

How to evaluate deep learning for cancer diagnostics - factors and recommendations.

Roxana Daneshjou1, Bryan He2, David Ouyang3, James Y Zou4.   

Abstract

The large volume of data used in cancer diagnosis presents a unique opportunity for deep learning algorithms, which improve in predictive performance with increasing data. When applying deep learning to cancer diagnosis, the goal is often to learn how to classify an input sample (such as images or biomarkers) into predefined categories (such as benign or cancerous). In this article, we examine examples of how deep learning algorithms have been implemented to make predictions related to cancer diagnosis using clinical, radiological, and pathological image data. We present a systematic approach for evaluating the development and application of clinical deep learning algorithms. Based on these examples and the current state of deep learning in medicine, we discuss the future possibilities in this space and outline a roadmap for implementations of deep learning in cancer diagnosis.
Copyright © 2021 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Artificial Intelligence; Cancer diagnostics; Deep learning; Machine learning

Mesh:

Year:  2021        PMID: 33513392      PMCID: PMC8068597          DOI: 10.1016/j.bbcan.2021.188515

Source DB:  PubMed          Journal:  Biochim Biophys Acta Rev Cancer        ISSN: 0304-419X            Impact factor:   10.680


  19 in total

1.  Effect of a deep-learning computer-aided detection system on adenoma detection during colonoscopy (CADe-DB trial): a double-blind randomised study.

Authors:  Pu Wang; Xiaogang Liu; Tyler M Berzin; Jeremy R Glissen Brown; Peixi Liu; Chao Zhou; Lei Lei; Liangping Li; Zhenzhen Guo; Shan Lei; Fei Xiong; Han Wang; Yan Song; Yan Pan; Guanyu Zhou
Journal:  Lancet Gastroenterol Hepatol       Date:  2020-01-22

2.  Deep Convolutional Neural Networks for Image Classification: A Comprehensive Review.

Authors:  Waseem Rawat; Zenghui Wang
Journal:  Neural Comput       Date:  2017-06-09       Impact factor: 2.026

3.  AI can be sexist and racist - it's time to make it fair.

Authors:  James Zou; Londa Schiebinger
Journal:  Nature       Date:  2018-07       Impact factor: 49.962

Review 4.  Skin cancer in skin of color.

Authors:  Hugh M Gloster; Kenneth Neal
Journal:  J Am Acad Dermatol       Date:  2006-11       Impact factor: 11.527

5.  Dermatologist-level classification of skin cancer with deep neural networks.

Authors:  Andre Esteva; Brett Kuprel; Roberto A Novoa; Justin Ko; Susan M Swetter; Helen M Blau; Sebastian Thrun
Journal:  Nature       Date:  2017-01-25       Impact factor: 49.962

Review 6.  A primer on deep learning in genomics.

Authors:  James Zou; Mikael Huss; Abubakar Abid; Pejman Mohammadi; Ali Torkamani; Amalio Telenti
Journal:  Nat Genet       Date:  2018-11-26       Impact factor: 38.330

Review 7.  High-performance medicine: the convergence of human and artificial intelligence.

Authors:  Eric J Topol
Journal:  Nat Med       Date:  2019-01-07       Impact factor: 53.440

8.  A deep learning system for differential diagnosis of skin diseases.

Authors:  R Carter Dunn; David Coz; Yuan Liu; Ayush Jain; Clara Eng; David H Way; Kang Lee; Peggy Bui; Kimberly Kanada; Guilherme de Oliveira Marinho; Jessica Gallegos; Sara Gabriele; Vishakha Gupta; Nalini Singh; Vivek Natarajan; Rainer Hofmann-Wellenhof; Greg S Corrado; Lily H Peng; Dale R Webster; Dennis Ai; Susan J Huang; Yun Liu
Journal:  Nat Med       Date:  2020-05-18       Impact factor: 53.440

9.  International evaluation of an AI system for breast cancer screening.

Authors:  Scott Mayer McKinney; Marcin Sieniek; Varun Godbole; Jonathan Godwin; Natasha Antropova; Hutan Ashrafian; Trevor Back; Mary Chesus; Greg S Corrado; Ara Darzi; Mozziyar Etemadi; Florencia Garcia-Vicente; Fiona J Gilbert; Mark Halling-Brown; Demis Hassabis; Sunny Jansen; Alan Karthikesalingam; Christopher J Kelly; Dominic King; Joseph R Ledsam; David Melnick; Hormuz Mostofi; Lily Peng; Joshua Jay Reicher; Bernardino Romera-Paredes; Richard Sidebottom; Mustafa Suleyman; Daniel Tse; Kenneth C Young; Jeffrey De Fauw; Shravya Shetty
Journal:  Nature       Date:  2020-01-01       Impact factor: 49.962

10.  Classification and mutation prediction from non-small cell lung cancer histopathology images using deep learning.

Authors:  Nicolas Coudray; Paolo Santiago Ocampo; Theodore Sakellaropoulos; Navneet Narula; Matija Snuderl; David Fenyö; Andre L Moreira; Narges Razavian; Aristotelis Tsirigos
Journal:  Nat Med       Date:  2018-09-17       Impact factor: 53.440

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  3 in total

Review 1.  Lack of Transparency and Potential Bias in Artificial Intelligence Data Sets and Algorithms: A Scoping Review.

Authors:  Roxana Daneshjou; Mary P Smith; Mary D Sun; Veronica Rotemberg; James Zou
Journal:  JAMA Dermatol       Date:  2021-11-01       Impact factor: 11.816

Review 2.  Evaluating Cancer-Related Biomarkers Based on Pathological Images: A Systematic Review.

Authors:  Xiaoliang Xie; Xulin Wang; Yuebin Liang; Jingya Yang; Yan Wu; Li Li; Xin Sun; Pingping Bing; Binsheng He; Geng Tian; Xiaoli Shi
Journal:  Front Oncol       Date:  2021-11-10       Impact factor: 6.244

Review 3.  Ageing and cancer: a research gap to fill.

Authors:  Eric Solary; Nancy Abou-Zeid; Fabien Calvo
Journal:  Mol Oncol       Date:  2022-05-21       Impact factor: 7.449

  3 in total

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