| Literature DB >> 33513128 |
Shun Guo1,2, Jin-Yong Zhou3, Cheng Tan1,2, Le Shi4, Yue Shi1,2, Jianxin Shi1,2.
Abstract
BACKGROUND This study explored the mechanism of action of Ephedrae Herba-Cinnamomi Ramulus couplet medicine (MGCM) at the pharmacological level in the treatment of psoriasis. MATERIAL AND METHODS The active ingredients in MGCM were mined through literature retrieval and the BATMAN-TCM database, and potential targets were predicted. In addition, targets associated with psoriasis were acquired using multiple disease-related databases. Thereafter, an interaction network between candidate MGCM targets and the known psoriasis-associated targets was constructed based on the protein-protein interaction (PPI) data, using the STRING database. Then, the topological parameter degree was determined for mining the core targets for MGCM in the treatment of psoriasis, which also represented the major hubs within the PPI network. In addition, the core networks of targets and ingredients were constructed using Cytoscape software to apply MGCM in the treatment for psoriasis. These core targets were then analyzed for Gene Ontology biological processes and Kyoto Encyclopedia of Genes and Genomes pathway enrichment using OmicShare. RESULTS The ingredient-target core network of MGCM for treating psoriasis was constructed; it contained 52 active ingredients and corresponded to 19 core targets. In addition, based on enrichment analysis, these core targets were majorly enriched for several biological processes (immuno-inflammatory responses, leukocyte differentiation, energy metabolism, angiogenesis, and programmed cell death) together with the relevant pathways (Janus kinase-signal transducer and activator of transcription, toll-like receptors, nuclear factor kappaB, vascular endothelial growth factor, and peroxisome proliferator-activated receptor), thus identifying the possible mechanism of action of MGCM in treating psoriasis. CONCLUSIONS The present network pharmacology study indicated that MGCM alleviates various pathological factors of psoriasis through multiple compounds, multiple targets, and multiple pathways.Entities:
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Year: 2021 PMID: 33513128 PMCID: PMC7852043 DOI: 10.12659/MSM.927421
Source DB: PubMed Journal: Med Sci Monit ISSN: 1234-1010
All the candidate ingredients of Ephedrae Herba-Cinnamomi Ramulus couplet medicines (MGCM).
| Compound No. | Compound name | ID from TCMID database |
|---|---|---|
| GZ01 | Procurcumenol | ID: 17861 from TCMID database |
| GZ02 | Tetradecanal | ID: 24042 from TCMID database |
| GZ03 | Cinnamaldehyde | ID: 3693 from TCMID database |
| GZ04 | 5-Cinnamoyl-9-O-Acetylphototaxicin I | ID: 3697 from TCMID database |
| GZ05 | Anethole | ID: 1186 from TCMID database |
| GZ06 | Protocatechuic Acid | ID: 23246 from TCMID database |
| GZ07 | Coumarinic Acid | ID: 30820 from TCMID database |
| GZ08 | Gamma-Sitosterol | ID: 29509 from TCMID database |
| GZ09 | Camphor | ID: 3048 from TCMID database |
| GZ10 | Proanthocyanidin B2 | ID: 17855 from TCMID database |
| GZ11 | Melilotocarpan A | ID: 13672 from TCMID database |
| GZ12 | Farnesol | ID: 7733 from TCMID database |
| GZ13 | Nerolidol | ID: 23421 from TCMID database |
| GZ14 | Trans-Cinnamic Acid | ID: 23114 from TCMID database |
| MH01 | Alpha-Linolenic Acid | ID: 23145 from TCMID database |
| MH02 | Dimethyl Phthalate | ID: 6397 from TCMID database |
| MH03 | Ethanol | ID: 23458 from TCMID database |
| MH04 | Carvacrol | ID: 3231 from TCMID database |
| MH05 | 2,4-Decadienal | ID: 23260 from TCMID database |
| MH06 | Nor-Rubrofusarin | ID: 15782 from TCMID database |
| MH07 | -Epiafzelechin | ID: 25807 from TCMID database |
| MH08 | Octanol | ID: 15967 from TCMID database |
| MH09 | Cis-P-2-Menthen-1-Ol | ID: 13763 from TCMID database |
| MH10 | Gamma-Terpinene | ID: 23910 from TCMID database |
| MH11 | Pseudoephedrine | ID: 24296 from TCMID database |
| MH12 | D-Norpseudoephedrine | ID: 15780 from TCMID database |
| MH13 | P-Cymene | ID: 4549 from TCMID database |
| MH14 | Lauric Acid | ID: 23228 from TCMID database |
| MH15 | Tetradecanoic Acid | ID: 23983 from TCMID database |
| MH16 | O-Xylene | ID: 23233 from TCMID database |
| MH17 | D-Pseudoephedrine | ID: 18010 from TCMID database |
| MH18 | Apigenin | ID: 1476 from TCMID database |
| MH19 | Methyl Acetate | ID: 24578 from TCMID database |
| MH20 | Guaiazulene | ID: 9037 from TCMID database |
| MH21 | Safranal | ID: 19105 from TCMID database |
| MH22 | 1,8-Cineole | ID: 3689 from TCMID database |
| MH23 | Methyl Benzoate | ID: 24934 from TCMID database |
| MH24 | Alpha-Terpineol | ID: 23119 from TCMID database |
| MH25 | 1,4-Cineole | ID: 3688 from TCMID database |
| MH26 | Ephedrine | ID: 6814 from TCMID database |
| MH27 | 1-Octen-3-Ol | ID: 15973 from TCMID database |
| MH28 | M-Xylene | ID: 23212 from TCMID database |
| MH29 | Decanoic Acid | ID: 23454 from TCMID database |
| MH30 | 11-Methoxyhumantenine | ID: 13941 from TCMID database |
| MH31 | Beta-Eudesmol | ID: 23867 from TCMID database |
| MH32 | Phenanthrene | ID: 23852 from TCMID database |
| MH33 | 2,3,5,6-Tetramethyl-Pyrazine | ID: 24520 from TCMID database |
| MH34 | 2-Methyl-2-Butenal | ID: 24323 from TCMID database |
| MH35 | Kaempferol | ID: 12017 from TCMID database |
| MH36 | Geraniol | ID: 8311 from TCMID database |
| MH37 | Dibutyl Phthalate | ID: 5403 from TCMID database |
| MH38 | Maragenin Ii | ID: 13539 from TCMID database |
| MH39 | Limonene | ID: 23184 from TCMID database |
| MH40 | Alpha-Pinene | ID: 23880 from TCMID database |
| MH41 | Terpinen-4-Ol | ID: 20976 from TCMID database |
| MH42 | Delta-Terpineol | ID: 25205 from TCMID database |
| MH43 | Naphthalene | ID: 15244 from TCMID database |
| MH44 | Beta-Pinene | ID: 23545 from TCMID database |
| MH45 | 6-Methyl-2-Heptanone | ID: 23701 from TCMID database |
| MH46 | Hexadecanoic Acid | ID: 24748 from TCMID database |
| MH47 | Xylene | ID: 24148 from TCMID database |
| MH48 | O-Methylptelefolonium | ID: 14697 from TCMID database |
| MH49 | Camphor | ID: 3048 from TCMID database |
| MH50 | Citronellol | ID: 3768 from TCMID database |
| MH51 | Heptanoic Acid | ID: 23191 from TCMID database |
| MH52 | 7-Demethylsuberosin | ID: 5097 from TCMID database |
| MH53 | Methylpseudoephedrine | ID: 24866 from TCMID database |
| MH54 | N-Triacontanol | ID: 21525 from TCMID database |
| MH55 | Beta-Cyclocitral | ID: 24417 from TCMID database |
| MH56 | Linalool | ID: 12843 from TCMID database |
| MH57 | Nerolidol | ID: 23421 from TCMID database |
| MH58 | Norpseudoephedrine | ID: 23736 from TCMID database |
| MH59 | Myrcene | ID: 15138 from TCMID database |
| MH60 | Cibarian | ID: 3634 from TCMID database |
| MH61 | Methyl-7-Epiganoderate | ID: 14390 from TCMID database |
| MH62 | Cuminyl Alcohol | ID: 24396 from TCMID database |
| MH63 | Thymol | ID: 21344 from TCMID database |
| MH64 | Menthyl Acetate | ID: 13772 from TCMID database |
| MH65 | Methyl Palmitate | ID: 23038 from TCMID database |
| MH66 | N-Methylephedrine | ID: 14388 from TCMID database |
| MH67 | Linolenic Acid | ID: 23046 from TCMID database |
| MH68 | Octanoic Acid | ID: 23059 from TCMID database |
| MH69 | Dihydro-Beta-Ionone | ID: 24357 from TCMID database |
| MH70 | 3,4-Dimethyl-5-Phenyloxazolidine | ID: 6395 from TCMID database |
| MH71 | Acetophenone | ID: 115 from TCMID database |
| MH72 | 1-Phenyl-1,2-Propanedione | ID: 24685 from TCMID database |
| MH73 | Hexahydrofarnesylacetone | ID: 23775 from TCMID database |
| MH74 | Alpha-Terpinolene | ID: 24431 from TCMID database |
| MH75 | Pseudoginsenoside F11 | ID: 18011 from TCMID database |
| MH76 | 1,5-Dimethyl-Naphthalene | ID: 24177 from TCMID database |
| MH77 | Dodecanoic Acid | ID: 24924 from TCMID database |
| MH78 | Norephedrine | ID: 15736 from TCMID database |
| MH79 | Maokonine | ID: 13536 from TCMID database |
| MH80 | Nonanal | ID: 24697 from TCMID database |
| MH81 | 6-Methyl-5-Hepten-2-One | ID: 23462 from TCMID database |
| MH82 | 1-Octanol | ID: 23425 from TCMID database |
| MH83 | Chuanxiongzine | ID: 3633 from TCMID database |
| MH84 | Tetramethylpyrazine | ID: 23142 from TCMID database |
| MH85 | Linoleic Acid | ID: 24136 from TCMID database |
| MH86 | Beta-Ionone | ID: 23950 from TCMID database |
| MH87 | Octadecanoic Acid | ID: 23678 from TCMID database |
| MH88 | 2,3,4-Trimethyl-5-Phenyloxazolidine | ID: 21957 from TCMID database |
| MH89 | Pentadecanoic Acid | ID: 23379 from TCMID database |
| MH90 | Phenethylamine | ID: 17069 from TCMID database |
| MH91 | Trans-2-Nonenal | ID: 23241 from TCMID database |
| MH92 | Isobutyl Benzoate | ID: 24655 from TCMID database |
| MH93 | Leucodelphinidin | ID: 12711 from TCMID database |
| MH94 | Alpha-Ionone | ID: 24480 from TCMID database |
| MH95 | Phytol | ID: 17251 from TCMID database |
| MH96 | Myricadiol | ID: 15146 from TCMID database |
| MH97 | Leucopelargonidin | ID: 12712 from TCMID database |
| MH98 | Nonanoic Acid | ID: 23252 from TCMID database |
| MH99 | Hexanol | ID: 9513 from TCMID database |
| MH100 | 16-Triacontanol | ID: 21524 from TCMID database |
| MH101 | 2-Pentadecanone | ID: 24695 from TCMID database |
| MH102 | Sabinene | ID: 19084 from TCMID database |
| MH103 | Hexanoic Acid | ID: 23052 from TCMID database |
| MH104 | Piperitone | ID: 17442 from TCMID database |
Figure 1Construction of the network of Ephedrae Herba-Cinnamomi Ramulus couplet medicine (MGCM) compounds and their potential targets. The active compounds (compounds ID) collected from diverse herbal medicines were linked with corresponding potential targets to construct the compound-target network, with a node indicating an active compound (the diverse colors of circle stand for diverse herbal medicines) and the target (green square).
Figure 2Identification of the core targets of Ephedrae Herba-Cinnamomi Ramulus couplet medicines (MGCM) in treating psoriasis. (A) The Venn diagram shows that MGCM shared 117 potential targets with known components of the pathological course related to psoriasis. (B) The protein–protein interaction (PPI) network of all 117 candidate targets of MGCM in treating psoriasis. (C) The PPI network of the core targets of MGCM in treating psoriasis.
Degree values of core targets for Ephedrae Herba-Cinnamomi Ramulus couplet medicines (MGCM) against psoriasis.
| Targets name | Degree |
|---|---|
| ALB | 84 |
| TNF | 91 |
| IL6 | 93 |
| TP53 | 75 |
| MAPK1 | 69 |
| INS | 78 |
| IL10 | 82 |
| IL1B | 78 |
| EGFR | 69 |
| PTGS2 | 71 |
| JUN | 66 |
| IL4 | 69 |
| IGF1 | 59 |
| IL2 | 67 |
| IFNG | 67 |
| CCL2 | 69 |
| ICAM1 | 64 |
| IL17A | 63 |
| CSF2 | 61 |
Fifty-two core pharmacologically active ingredients of Ephedrae Herba-Cinnamomi Ramulus couplet medicines (MGCM) in the treatment of psoriasis.
| Compound No. | Compound name |
|---|---|
| GZ01 | Procurcumenol |
| GZ05 | Anethole |
| GZ06 | Protocatechuic Acid |
| GZ07 | Coumarinic Acid |
| GZ12 | Farnesol |
| GZ14 | Trans-Cinnamic Acid |
| MH01 | Alpha-Linolenic Acid |
| MH03 | Ethanol |
| MH04 | Carvacrol |
| MH10 | Gamma-Terpinene |
| MH100 | 16-Triacontanol |
| MH103 | Hexanoic Acid |
| MH11 | Pseudoephedrine |
| MH12 | D-Norpseudoephedrine |
| MH14 | Lauric Acid |
| MH15 | Tetradecanoic Acid |
| MH17 | D-Pseudoephedrine |
| MH23 | Methyl Benzoate |
| MH26 | Ephedrine |
| MH29 | Decanoic Acid |
| MH31 | Beta-Eudesmol |
| MH40 | Alpha-Pinene |
| MH41 | Terpinen-4-Ol |
| MH44 | Beta-Pinene |
| MH45 | 6-Methyl-2-Heptanone |
| MH47 | Xylene |
| MH49 | Camphor |
| MH52 | 7-Demethylsuberosin |
| MH54 | N-Triacontanol |
| MH55 | Beta-Cyclocitral |
| MH59 | Myrcene |
| MH60 | Cibarian |
| MH61 | Methyl-7-Epiganoderate |
| MH64 | Menthyl Acetate |
| MH67 | Linolenic Acid |
| MH68 | Octanoic Acid |
| MH70 | 3,4-Dimethyl-5-Phenyloxazolidine |
| MH71 | Acetophenone |
| MH72 | 1-Phenyl-1,2-Propanedione |
| MH73 | Hexahydrofarnesylacetone |
| MH75 | Pseudoginsenoside F11 |
| MH78 | Norephedrine |
| MH79 | Maokonine |
| MH80 | Nonanal |
| MH82 | 1-Octanol |
| MH83 | Chuanxiongzine |
| MH86 | Beta-Ionone |
| MH87 | Octadecanoic Acid |
| MH88 | 2,3,4-Trimethyl-5-Phenyloxazolidine |
| MH90 | Phenethylamine |
| MH95 | Phytol |
| MH99 | Hexanol |
Figure 3(A) Construction of the core network of active ingredients of Ephedrae Herba-Cinnamomi Ramulus couplet medicines (MGCM) and their targets in treating psoriasis, and the statistical analysis of the degree of each (B) ingredient and (C) target in the network. All nodes were sorted and calculated according to the degree of freedom, and the node size in the network was associated with the degree.
Figure 4Enrichment analysis of core targets of Ephedrae Herba-Cinnamomi Ramulus couplet medicines (MGCM) in treating psoriasis based on OmicShare. We considered a P value cutoff of ≤0.05 as significant and applied hypergeometric tests to identify (A) enriched Gene Ontology biological processes (GO-BP) and (B) Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways. The chart shows an overview of the analysis with up to 20 significantly enriched processes and pathways.